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.Rhistory
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library(SigProfilerSimulatorR)
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
setwd("~/Desktop")
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
library(SigProfilerSimulatorR)
setwd("~/Desktop")
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
library(SigProfilerMatrixGeneratorR)
SigProfilerMatrixGeneratorR("BRCA", "GRCh37", "/Users/ebergstr/Desktop/BRCA/")
library("reticulate")
py_config("/anaconda3/bin/python3")
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
library(SigProfilerSimulatorR)
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=list("96"))
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=("96"))
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts="96")
library(SigProfilerSimulatorR)
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts="96")
library(SigProfilerSimulatorR)
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts="96")
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=c("96"))
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=list("96"))
integer(1.0)
integer("1.0")
integer("2.0")
integer(2)
integer(3)
as.integer(3.0)
library(SigProfilerSimulatorR)
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
SigProfilerSimulatorR("BRCA", "/Users/ebergstr/Desktop/BRCA/", "GRCh37", contexts=list("96"))
probability("1", mutation="C>A", context="SBS6")
library(SigProfilerSimulatorR)
use_python("/anaconda3/bin/python3")
py_config()
library(SigProfilerSimulatorR)
probability("1", mutation="C>A", context="SBS6")
probability("1", mutation="C>A", context="SBS6", genome="GRCh37")
probability(chromosome="1", position=1000, mutation="C>A", context="SBS6", genome="GRCh37", mutation_count=1)
probability(chromosome="1", position=1000, mutation="C>A", context="SBS6", genome="GRCh37", mutation_count=100)
probability(chromosome="1", position=1000, mutation="A[C>A]A", context="SBS6", genome="GRCh37", mutation_count=100)