DESCRIPTION

Package: scClustViz
Type: Package
Title: Differential Expression-based scRNAseq Cluster Assessment and Viewing
Version: 1.3.12
Date: 2022-12-06
Authors@R: c(as.person("Brendan T. Innes <brendan.innes@mail.utoronto.ca> [aut,cre]"),
             as.person("Gary D. Bader [aut,ths]"))
Description: An interactive R Shiny tool for visualizing single-cell RNAseq 
    clustering results from common analysis pipelines. Its main goal is 
    two-fold: A: to help select a biologically appropriate resolution or K from 
    clustering results by assessing differential expression between the 
    resulting clusters; and B: help annotate cell types and identify marker 
    genes.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Suggests:
    cluster (>= 2.0.7-1),
    org.Hs.eg.db (>= 3.6.0),
    org.Mm.eg.db (>= 3.6.0),
    Seurat (>= 2.3.4),
    SingleCellExperiment (>= 1.2.0),
    testthat (>= 2.0.1),
    presto (>= 1.0.0)
Imports:
    scales (>= 1.0.0),
    TeachingDemos (>= 2.10),
    colorspace (>= 1.4-1),
    pbapply (>= 1.3.4),
    markdown (>= 0.8),
    grDevices (>= 3.5.1)
Depends:
    shiny (>= 1.1.0),
Remotes:
    immunogenomics/presto
Collate: 
    'sCVdataClass.R'
    'dataAccess.R'
    'deTest.R'
    'helperFx.R'
    'spreadLabels2.R'
    'shinyModules.R'
    'runViz.R'
    'scClustViz.R'