placentaImmuneCellRefEPIC450k

[kyleac]

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• Repository: https://github.com/kyleac/placentaImmuneCellRefEPIC450k

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[bioc-issue-bot]

Hi @kyleac

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: placentaImmuneCellRefEPIC450k
Type: Package
Title: Placenta and Immune Cell Type DNA Methylation Microarray Deconvolution Reference
Version: 0.99.0
Authors@R: 
    c(
      person("Kyle", "Campbell", email = "[email protected]", role = c("aut", "cre"),
      comment=c(ORCID="
      https://orcid.org/0000-0002-1836-0341")),
      person("Kelly", "Bakulski", email = "[email protected]", role = c("ctb"),
      comment=c(ORCID="
      https://orcid.org/0000-0002-9605-6337")
      )
      )
Description: Companion data package to "Placental and Immune Cell DNA
    Methylation Reference Panel for Bulk Tissue Cell Composition Estimation in
    Epidemiological Studies." This package provides the signature cell type matrix
    of cell type-defining CpGs common to the 450k and EPIC microarrays for
    5 placental (cytotrophoblast, endothelial, Hofbauer, stromal, and
    syncytiotrophoblast), 6 peripheral immune (B cell, CD4T, CD8T, monocyte,
    neutrophil, and natural killer), and nucleated red blood cell types. The
    signature matrix is designed for plug and play use with EpiDISH's epidish(ref.m)
    argument, Bioconductor R package, DOI <10.18129/B9.bioc.EpiDISH>. This data
    package also includes the cell type samples used to create the matrix so
    other users can adapt it to their needs, if desired.
License: MIT
Encoding: UTF-8
LazyData: true
LazyDataCompression:gzip
Suggests:
    knitr,
    rmarkdown
VignetteBuilder: knitr
Depends: utils
biocViews: DNAMethylation, MethylationArray, Microarray, Software, TissueMicroarray

[lshep]

A few minor corrections before moving this on to building:

This is a data package not software and should use biocViews from the ExperimentData classification.

Please remove doc directory. These should be generated automatically when running R CMD build.