v3.0.0

• rename neuron to morphology
• refactor features
• refactor viewer
• allow pass arguments to neurom stats

See CHANGELOG.rst for more details on changes.

Fix 'sholl_frequency' feature for a neuron population

• better comments to Population (#938)
• fix _neuron_population for 'sholl_frequency' feature over a neuron population (#944)
• use a tuple for subplot default value in view.common.get_figure (#946)

Remove `NeuriteType.all` from `NEURITES`

• Use MorphIO specification for definitions doc page (#925)
• Introduce a new method to calculate partition asymmetry by Uylings (#930)
• document NEURITES (#932)
• Follow the same rules of morphology validation as MorphIO (#934)
• Remove the cli command neurom features (#933)
• remove NeuriteType.all from NEURITES (#931)

Fix 'section_path_lengths' feature for Population (#927)

v2.2.1

Fix 'section_path_lengths' feature for Population (#927)

v2.2.0: Don't force loading of neurons into memory (#922)

• Optimize Sholl analysis code (#905, #919)
• Update documentation (#899, #907, #908, #911, #923, #917)
• Include neuron filename extension into its name (#909)
• Extend tree_type_checker to accept a single tuple as an argument. Additionally validate
  function's arguments (#912, #914)
• fix test data path in examples (#916)
• move 'total_length' feature to neuronfunc (#924)
• Don't force loading of neurons into memory (#922)

Morphologies without soma

• allow for morphologies without soma (#900)

Fix custom neurite bug (introduce all custom neurites from MorphIO)

• clean imports (keep backward compatibility) (#898)
• import plotly locally as it is an extra dependency (#901)
• Account for all custom neurite types in NeuriteType (#902)
• less pylint disables (#903)

Single cli entry under `neurom`

• Add push to codecov and run ci on master push (#895)
• Update LICENSE.txt (#896)
• nose to pytest, move all tests to 'tests' folder (#892)
• Code cleaning of 'apps' package (#888)
• Fix notebooks (#897)

NeuroM 2.0.1

Fix pypi version publishing (#893)

NeuroM 2.0

Use MorphIO for reading/writing morphologies.

For the full list of changes see https://neurom.readthedocs.io/en/latest/migration_v2.html