Removing all wildcard imports #1150
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Checks | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - '*_rel' | |
| repository_dispatch: | |
| # to run this, send a POST API call at repos/<user>/<repo>/dispatches with the specified event_type | |
| # e.g. `gh repos/CCSI-Toolset/FOQUS/dispatches -F event_type=ci_run_tests` | |
| types: [ci_run_tests] | |
| workflow_dispatch: | |
| pull_request: | |
| types: | |
| - opened | |
| # ready_for_review occurs when a draft PR is turned to non-draft | |
| - ready_for_review | |
| # synchronize occurs whenever commits are pushed to the PR branch | |
| - synchronize | |
| defaults: | |
| run: | |
| # the -l flag is needed for the Conda environment to be activated properly | |
| shell: bash -l -eo pipefail {0} | |
| env: | |
| FOQUS_CONDA_ENV_NAME_DEV: ccsi-foqus-dev | |
| PYTEST_BASETEMP: .pytest | |
| DEFAULT_PYTHON_VERSION: '3.10' | |
| jobs: | |
| code-formatting: | |
| name: Code formatting (Black) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.DEFAULT_PYTHON_VERSION }} | |
| - name: Install Black | |
| # unlike the other jobs, we don't need to install FOQUS and/or all the dev dependencies, | |
| # but we still want to specify the Black version to use in requirements-dev.txt for local development | |
| # so we extract the relevant line and pass it to a simple `pip install` | |
| run: | | |
| # we store the version | |
| black_requirement="$(grep '^black.*$' requirements-dev.txt)" | |
| pip --no-cache-dir install --progress-bar off "$black_requirement" | |
| - name: Run Black to verify that the committed code is formatted | |
| run: | | |
| black --check . | |
| spell-check: | |
| name: Check Spelling | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Run Spell Checker | |
| uses: crate-ci/typos@master | |
| with: | |
| config: .typos.toml | |
| pytest: | |
| name: pytest (py${{ matrix.python-version }}/${{ matrix.os }}) | |
| runs-on: ${{ matrix.os-version }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| os: | |
| - linux | |
| - win64 | |
| - macos-x86_64 | |
| - macos | |
| include: | |
| - os: macos-x86_64 | |
| os-version: macos-13 | |
| - os: macos | |
| os-version: macos-14 | |
| - os: linux | |
| os-version: ubuntu-20.04 | |
| - os: win64 | |
| os-version: windows-2019 | |
| - python-version: '3.10' # avoid uploading coverage for full matrix | |
| use_coverage: true | |
| - python-version: '3.10' # install ML AI dependencies with coverage run | |
| optional-dependencies: -r requirements-mlai.txt | |
| - python-version: '3.11' # install ML AI dependencies with a newer Python version | |
| optional-dependencies: -r requirements-mlai.txt | |
| env: | |
| # uncomment this to debug Qt initialization errors | |
| # QT_DEBUG_PLUGINS: '1' | |
| MPLBACKEND: AGG | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.FOQUS_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ matrix.python-version }} | |
| miniconda-version: latest | |
| - name: Set up FOQUS | |
| uses: ./.github/actions/setup-foqus | |
| with: | |
| pip-install-target: -r requirements-dev.txt ${{ matrix.optional-dependencies }} | |
| - name: Set up GUI test environment (Linux) | |
| if: contains(matrix.os, 'linux') | |
| run: | | |
| echo "QT_QPA_PLATFORM=minimal" >> $GITHUB_ENV | |
| - name: Set common pytest flags | |
| run: | |
| echo 'PYTEST_ADDOPTS=--pyargs foqus_lib --maxfail=3 --verbose --color=yes --basetemp "${{ env.PYTEST_BASETEMP }}"' >> $GITHUB_ENV | |
| - name: Add pytest coverage flags | |
| if: matrix.use_coverage | |
| run: | |
| echo "PYTEST_ADDOPTS=$PYTEST_ADDOPTS --cov=./ --cov-report=xml --cov-report=term" >> $GITHUB_ENV | |
| - name: Run pytest | |
| run: | | |
| pytest foqus_lib/ | |
| - name: Upload pytest artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| # TODO decide if we need a separate upload for each Python version | |
| name: pytest-dir-${{ matrix.os }}-py${{ matrix.python-version }} | |
| path: ${{ env.PYTEST_BASETEMP }} | |
| retention-days: 7 | |
| - name: Upload coverage report as job artifact | |
| if: always() && matrix.use_coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report-${{ matrix.os }} | |
| path: coverage.xml | |
| if-no-files-found: error | |
| upload-coverage: | |
| name: Upload coverage report (Codecov) | |
| needs: [pytest] | |
| runs-on: ubuntu-latest | |
| steps: | |
| # the checkout step is needed to have access to codecov.yml | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-report-* | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: true | |
| # NOTE: secrets are not available for pull_request workflows | |
| # However, as of 2024-02-10, Codecov is still allowing tokenless upload from PRs | |
| # but does require token for other workflows e.g. merge to `main` | |
| # see https://github.com/codecov/codecov-action/issues/1274#issuecomment-1934437359 | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # pinning version after v0.7.0 broke tokenless upload | |
| # see codecov/codecov-action#1487 | |
| version: v0.7.2 | |
| pylint: | |
| name: pylint (py${{ matrix.python-version }}) | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.FOQUS_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up FOQUS | |
| uses: ./.github/actions/setup-foqus | |
| with: | |
| pip-install-target: -r requirements-dev.txt | |
| - name: Run pylint | |
| run: | | |
| pylint --rcfile=.pylint/pylintrc --disable=all --enable=E --enable=wrong-import-order foqus_lib/ | |
| docs: | |
| name: Build docs | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.FOQUS_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up FOQUS | |
| uses: ./.github/actions/setup-foqus | |
| with: | |
| pip-install-target: -r requirements-dev.txt | |
| - name: Build docs | |
| run: | | |
| cd docs/ | |
| make CLOPTS="-qW --keep-going" clean dummy |