1_crosswalk_fetch.yml

target_default: 1_crosswalk_fetch

packages:
  - dplyr
  - scipiper
  - dataRetrieval
  - stringr
  - sf
  - httr
  - sbtools
  - smoothr

sources:
  - 1_crosswalk_fetch/src/fetch_nhdhr.R
  - 1_crosswalk_fetch/src/fetch_wqp_sites.R
  - 1_crosswalk_fetch/src/file_utils.R

targets:
  1_crosswalk_fetch:
    depends:
      - 1_crosswalk_fetch/out/canonical_lakes_sf.rds.ind
      - 1_crosswalk_fetch/out/wqp_lake_temperature_sites_sf.rds.ind

  wqp_temperature_charnames:
    command: c(I(c(
      "Temperature",
      "Temperature, sample",
      "Temperature, water",
      "Temperature, water, deg F")))

 #https://www.waterqualitydata.us/portal/#siteType=Lake%2C%20Reservoir%2C%20Impoundment&characteristicName=Depth%2C%20Secchi%20disk%20depth&characteristicName=Water%20transparency%2C%20Secchi%20disc&characteristicName=Depth%2C%20Secchi%20disk%20depth%20(choice%20list)&characteristicName=Secchi%20Reading%20Condition%20(choice%20list)&mimeType=tsv
#
  nhd_HR_download_plan:
    command: create_nhd_HR_download_plan(I(c("Alabama", "Arizona", "Arkansas", "California", "Colorado", "Connecticut",
      "District_of_Columbia", "Florida", "Georgia", "Hawaii", "Illinois", "Iowa", "Kansas", "Kentucky",
      "Louisiana", "Maine", "Maryland", "Massachusetts", "Michigan", "Minnesota", "Mississippi", "Missouri", "Montana", "Nebraska",
      "Nevada", "New_Hampshire", "New_Jersey", "New_Mexico", "New_York", "North_Carolina", "North_Dakota", "Ohio", "Oklahoma",
      "Pennsylvania", "Rhode_Island", "South_Carolina", "South_Dakota", "Tennessee", "Utah", "Vermont", "Virginia",
      "Texas", "Indiana", "Oregon", "Idaho",
      "Washington", "West_Virginia", "Wisconsin", "Wyoming")),
      min_size = 40000, d_tolerance = I(0.0001))

  1_crosswalk_fetch_nhd_tasks.yml:
    command: create_nhd_HR_download_makefile(target_name, nhd_HR_download_plan,
      final_targets = I(c('1_crosswalk_fetch/out/canonical_lakes_sf.rds.ind',
      '2_crosswalk_munge/out/gnisname_nhdhr_xwalk.rds.ind')))

  1_crosswalk_fetch/out/canonical_lakes_sf.rds.ind:
    command: loop_tasks(nhd_HR_download_plan, '1_crosswalk_fetch_nhd_tasks.yml')

  # LOCKED THIS IN!!!
  1_crosswalk_fetch/out/wqp_lake_temperature_sites_sf.rds.ind:
    command: fetch_wqp_sites(target_name, characteristicName = wqp_temperature_charnames,
      sf_ind = '1_crosswalk_fetch/out/canonical_lakes_sf.rds.ind',
      box_res = 5, dummy = I('2021-04-05'),
      '1_crosswalk_fetch/src/fetch_wqp_sites.R')