RESOURCE.md

Literature Used in Calcium Imaging Ontology NARCI

Labs

• Pennartz Lab UvA

Main peer-review reference

• Population-Level Neural Codes Are Robust to Single-Neuron Variability from a Multidimensional Coding Perspective, Jorrit S. Montijn, Guido T. Meijer, Carien S. Lansink, and Cyriel M.A. Pennartz, Cell Reports 16, 2486–2498 (2016) doi

Concepts and terminology peer-review references

• Imaging Calcium in Neurons, Christine Grienberger and Arthur Konnerth, Neuron 73, March 8, (2012) doi

• Fast calcium sensor proteins for monitoring neural activity, Aleksandra Badura, Xiaonan Richard Sun, Andrea Giovannucci, Laura A. Lynch, and Samuel S.-H. Wang, Neurophotonics 1(2), 025008 (Oct–Dec 2014) doi

• Neuronal Calcium Sensor Proteins: Generating Diversity in Neuronal Ca 2+ Signalling, Robert D Burgoyne, Nat Rev Neurosci. 2007 March ; 8(3): 182–193. doi

Allen Brain Observatory

• Main page link
• Extensive Documentation on visual coding to stimulus setting and experimental details link

Wikipedia

• animal identification
• anesthetic
• medical imaging
• frame rate
• photomultiplier
• dc bias
• laser
• image scanner
• perception
• stimulus (physiology)
• visual cortex
• calcium imaging chemical indicators

Other resources

• hhmi janelia List of calcium indicators