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1.5.0-DEV-dfcba8768f.log
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Julia Version 1.5.0-DEV.13
Commit dfcba8768f (2020-01-06 06:02 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed URIParser ────────────── v0.4.0
Installed SortingAlgorithms ────── v0.3.1
Installed PDMats ───────────────── v0.9.10
Installed WoodburyMatrices ─────── v0.5.0
Installed Rmath ────────────────── v0.6.0
Installed StatsFuns ────────────── v0.9.3
Installed DiffRules ────────────── v1.0.0
Installed FFTW_jll ─────────────── v3.3.9+3
Installed OpenBLAS_jll ─────────── v0.3.7+4
Installed Kpax3 ────────────────── v0.5.2
Installed Arpack_jll ───────────── v3.5.0+2
Installed IntelOpenMP_jll ──────── v2018.0.3+0
Installed StaticArrays ─────────── v0.12.1
Installed Distances ────────────── v0.8.2
Installed DataStructures ───────── v0.17.7
Installed DiffResults ──────────── v1.0.2
Installed RecipesBase ──────────── v0.7.0
Installed Calculus ─────────────── v0.5.1
Installed LineSearches ─────────── v7.0.1
Installed QuadGK ───────────────── v2.3.1
Installed NLSolversBase ────────── v7.5.0
Installed FileIO ───────────────── v1.2.1
Installed BinDeps ──────────────── v1.0.0
Installed Missings ─────────────── v0.4.3
Installed Distributions ────────── v0.22.0
Installed CodecZlib ────────────── v0.6.0
Installed StatsBase ────────────── v0.32.0
Installed Clustering ───────────── v0.13.3
Installed BinaryProvider ───────── v0.5.8
Installed AbstractFFTs ─────────── v0.5.0
Installed CommonSubexpressions ─── v0.2.0
Installed AxisAlgorithms ───────── v1.0.0
Installed Ratios ───────────────── v0.3.1
Installed Requires ─────────────── v1.0.0
Installed OffsetArrays ─────────── v0.11.4
Installed Compat ───────────────── v2.2.0
Installed NaNMath ──────────────── v0.3.3
Installed FFTW ─────────────────── v1.2.0
Installed SpecialFunctions ─────── v0.8.0
Installed FillArrays ───────────── v0.8.2
Installed PositiveFactorizations ─ v0.2.3
Installed Parameters ───────────── v0.12.0
Installed ForwardDiff ──────────── v0.10.8
Installed TranscodingStreams ───── v0.9.5
Installed Reexport ─────────────── v0.2.0
Installed OrderedCollections ───── v1.1.0
Installed ArrayInterface ───────── v2.3.1
Installed DiffEqDiffTools ──────── v1.7.0
Installed MKL_jll ──────────────── v2019.0.117+0
Installed DataAPI ──────────────── v1.1.0
Installed JLD2 ─────────────────── v0.1.11
Installed NearestNeighbors ─────── v0.4.4
Installed Arpack ───────────────── v0.4.0
Installed KernelDensity ────────── v0.5.1
Installed Optim ────────────────── v0.19.7
Installed Interpolations ───────── v0.12.6
Updating `~/.julia/environments/v1.5/Project.toml`
[ad72c4b6] + Kpax3 v0.5.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[aaaa29a8] + Clustering v0.13.3
[944b1d66] + CodecZlib v0.6.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.7
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.0
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.8
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.6
[033835bb] + JLD2 v0.1.11
[5ab0869b] + KernelDensity v0.5.1
[ad72c4b6] + Kpax3 v0.5.2
[d3d80556] + LineSearches v7.0.1
[856f044c] + MKL_jll v2019.0.117+0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v0.11.4
[4536629a] + OpenBLAS_jll v0.3.7+4
[429524aa] + Optim v0.19.7
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.0
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_uV0XqB/Project.toml`
[no changes]
Updating `/tmp/jl_uV0XqB/Manifest.toml`
[no changes]
Building CodecZlib ───────→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_J0il5o/Project.toml`
[no changes]
Updating `/tmp/jl_J0il5o/Manifest.toml`
[no changes]
Building FFTW ────────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_eAAHwu/Project.toml`
[no changes]
Updating `/tmp/jl_eAAHwu/Manifest.toml`
[no changes]
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Updating `/tmp/jl_NbM5eC/Project.toml`
[no changes]
Updating `/tmp/jl_NbM5eC/Manifest.toml`
[no changes]
Testing Kpax3
Installed Parsers ─────────── v0.3.10
Installed PlotThemes ──────── v1.0.1
Installed ColorTypes ──────── v0.9.0
Installed Contour ─────────── v0.5.1
Installed FixedPointNumbers ─ v0.6.1
Installed Plots ───────────── v0.28.4
Installed FFMPEG ──────────── v0.2.4
Installed Colors ──────────── v0.11.2
Installed JSON ────────────── v0.21.0
Installed GeometryTypes ───── v0.7.7
Installed Showoff ─────────── v0.3.1
Installed PlotUtils ───────── v0.6.1
Installed GR ──────────────── v0.44.0
Installed Measures ────────── v0.3.1
Updating `/tmp/jl_2LZZY3/Project.toml`
[91a5bcdd] + Plots v0.28.4
Updating `/tmp/jl_2LZZY3/Manifest.toml`
[3da002f7] + ColorTypes v0.9.0
[5ae59095] + Colors v0.11.2
[d38c429a] + Contour v0.5.1
[c87230d0] + FFMPEG v0.2.4
[53c48c17] + FixedPointNumbers v0.6.1
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.7
[682c06a0] + JSON v0.21.0
[442fdcdd] + Measures v0.3.1
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.4
[992d4aef] + Showoff v0.3.1
Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Updating `/tmp/jl_FHtCfe/Project.toml`
[no changes]
Updating `/tmp/jl_FHtCfe/Manifest.toml`
[no changes]
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Updating `/tmp/jl_edidZS/Project.toml`
[no changes]
Updating `/tmp/jl_edidZS/Manifest.toml`
[no changes]
Building Plots ─→ `~/.julia/packages/Plots/qZHsp/deps/build.log`
Updating `/tmp/jl_fMbT5m/Project.toml`
[no changes]
Updating `/tmp/jl_fMbT5m/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_2LZZY3/Project.toml`
[aaaa29a8] Clustering v0.13.3
[b4f34e82] Distances v0.8.2
[5789e2e9] FileIO v1.2.1
[033835bb] JLD2 v0.1.11
[5ab0869b] KernelDensity v0.5.1
[ad72c4b6] Kpax3 v0.5.2
[91a5bcdd] Plots v0.28.4
[3cdcf5f2] RecipesBase v0.7.0
[276daf66] SpecialFunctions v0.8.0
[2913bbd2] StatsBase v0.32.0
[8bb1440f] DelimitedFiles
[de0858da] Printf
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Going through tests in 'data_processing/fasta_data_processing.jl'... PASSED!
Going through tests in 'data_processing/csv_data_processing.jl'... PASSED!
Going through tests in 'distances/simovici_jaroszewicz.jl'... PASSED!
Going through tests in 'distances/jaccard.jl'... PASSED!
Going through tests in 'misc/basic_functions.jl'... PASSED!
Going through tests in 'misc/partition_functions.jl'... PASSED!
Going through tests in 'types/settings.jl'... PASSED!
Going through tests in 'types/data.jl'... PASSED!
Going through tests in 'types/prior_col.jl'... PASSED!
Going through tests in 'types/prior_row.jl'... PASSED!
Going through tests in 'types/state.jl'... PASSED!
Going through tests in 'types/state_list.jl'... PASSED!
Going through tests in 'types/support.jl'... PASSED!
Going through tests in 'model/likelihoods.jl'... PASSED!
Going through tests in 'model/partition_cols.jl'... PASSED!
Going through tests in 'model/partition_rows.jl'... PASSED!
Going through tests in 'model/loss_binder.jl'... PASSED!
Going through tests in 'optimizer/local_mode.jl'... PASSED!
Going through tests in 'optimizer/selection.jl'... PASSED!
Going through tests in 'optimizer/crossover.jl'... PASSED!
Going through tests in 'optimizer/mutation.jl'... PASSED!
Going through tests in 'mcmc/partition_ratios.jl'... PASSED!
Going through tests in 'mcmc/log_likelihoods.jl'... PASSED!
Going through tests in 'mcmc/weight.jl'... PASSED!
Going through tests in 'mcmc/merge.jl'... PASSED!
Going through tests in 'mcmc/split.jl'... PASSED!
Going through tests in 'mcmc/gibbs.jl'... PASSED!
Going through tests in 'mcmc/biased_random_walk.jl'... PASSED!
Going through tests in 'mcmc/posterior.jl'... PASSED!
Going through tests in 'mcmc/diagnostics.jl'... PASSED!
Going through tests in 'estimate/write.jl'... PASSED!
Going through tests in 'plots/plots.jl'... PASSED!
Testing Kpax3 tests passed