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1.5.0-DEV-dfcba8768f.log
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Julia Version 1.5.0-DEV.13
Commit dfcba8768f (2020-01-06 06:02 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed SortingAlgorithms ───────── v0.3.1
Installed PaddedViews ─────────────── v0.4.2
Installed URIParser ───────────────── v0.4.0
Installed CoordinateTransformations ─ v0.5.0
Installed WoodburyMatrices ────────── v0.5.0
Installed CMake ───────────────────── v1.1.2
Installed PlotThemes ──────────────── v1.0.1
Installed DSP ─────────────────────── v0.6.2
Installed ImageTransformations ────── v0.8.1
Installed Parsers ─────────────────── v0.3.10
Installed Blosc ───────────────────── v0.5.1
Installed MIRT ────────────────────── v0.9.0
Installed Colors ──────────────────── v0.11.2
Installed FFTW_jll ────────────────── v3.3.9+3
Installed Graphics ────────────────── v1.0.1
Installed StaticArrays ────────────── v0.12.1
Installed IntelOpenMP_jll ─────────── v2018.0.3+0
Installed DataStructures ──────────── v0.17.7
Installed ColorTypes ──────────────── v0.9.0
Installed HDF5 ────────────────────── v0.12.5
Installed ColorVectorSpace ────────── v0.8.2
Installed RecipesBase ─────────────── v0.7.0
Installed ComputationalResources ──── v0.3.0
Installed BenchmarkTools ──────────── v0.4.3
Installed Missings ────────────────── v0.4.3
Installed Contour ─────────────────── v0.5.1
Installed Plots ───────────────────── v0.28.4
Installed FFTViews ────────────────── v0.3.0
Installed FixedPointNumbers ───────── v0.6.1
Installed GR ──────────────────────── v0.44.0
Installed FileIO ──────────────────── v1.2.1
Installed BinDeps ─────────────────── v1.0.0
Installed ImageCore ───────────────── v0.8.10
Installed StatsBase ───────────────── v0.32.0
Installed BinaryProvider ──────────── v0.5.8
Installed MappedArrays ────────────── v0.2.2
Installed AxisAlgorithms ──────────── v1.0.0
Installed AbstractFFTs ────────────── v0.5.0
Installed IdentityRanges ──────────── v0.3.0
Installed CatIndices ──────────────── v0.2.0
Installed OpenSpecFun_jll ─────────── v0.5.3+1
Installed LinearMapsAA ────────────── v0.3.0
Installed MosaicViews ─────────────── v0.1.0
Installed MIRTio ──────────────────── v0.2.1
Installed Requires ────────────────── v1.0.0
Installed OffsetArrays ────────────── v0.11.4
Installed Ratios ──────────────────── v0.3.1
Installed FFTW ────────────────────── v1.2.0
Installed Compat ──────────────────── v2.2.0
Installed NaNMath ─────────────────── v0.3.3
Installed Parameters ──────────────── v0.12.0
Installed SpecialFunctions ────────── v0.9.0
Installed LaTeXStrings ────────────── v1.0.3
Installed Polynomials ─────────────── v0.6.0
Installed GeometryTypes ───────────── v0.7.7
Installed Reexport ────────────────── v0.2.0
Installed Wavelets ────────────────── v0.9.0
Installed MKL_jll ─────────────────── v2019.0.117+0
Installed TiledIteration ──────────── v0.2.3
Installed FFMPEG ──────────────────── v0.2.4
Installed Rotations ───────────────── v0.13.0
Installed ImageFiltering ──────────── v0.6.9
Installed Measures ────────────────── v0.3.1
Installed CustomUnitRanges ────────── v0.2.0
Installed DataAPI ─────────────────── v1.1.0
Installed OrderedCollections ──────── v1.1.0
Installed JSON ────────────────────── v0.21.0
Installed CMakeWrapper ────────────── v0.2.3
Installed Showoff ─────────────────── v0.3.1
Installed NFFT ────────────────────── v0.4.0
Installed LinearMaps ──────────────── v2.5.2
Installed PlotUtils ───────────────── v0.6.1
Installed Interpolations ──────────── v0.12.6
Updating `~/.julia/environments/v1.5/Project.toml`
[7035ae7a] + MIRT v0.9.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[13072b0f] + AxisAlgorithms v1.0.0
[6e4b80f9] + BenchmarkTools v0.4.3
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[aafaddc9] + CatIndices v0.2.0
[3da002f7] + ColorTypes v0.9.0
[c3611d14] + ColorVectorSpace v0.8.2
[5ae59095] + Colors v0.11.2
[34da2185] + Compat v2.2.0
[ed09eef8] + ComputationalResources v0.3.0
[d38c429a] + Contour v0.5.1
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v0.2.0
[717857b8] + DSP v0.6.2
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.7
[c87230d0] + FFMPEG v0.2.4
[4f61f5a4] + FFTViews v0.3.0
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[5789e2e9] + FileIO v1.2.1
[53c48c17] + FixedPointNumbers v0.6.1
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.7
[a2bd30eb] + Graphics v1.0.1
[f67ccb44] + HDF5 v0.12.5
[bbac6d45] + IdentityRanges v0.3.0
[a09fc81d] + ImageCore v0.8.10
[6a3955dd] + ImageFiltering v0.6.9
[02fcd773] + ImageTransformations v0.8.1
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.6
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[7a12625a] + LinearMaps v2.5.2
[599c1a8e] + LinearMapsAA v0.3.0
[7035ae7a] + MIRT v0.9.0
[274281c4] + MIRTio v0.2.1
[856f044c] + MKL_jll v2019.0.117+0
[dbb5928d] + MappedArrays v0.2.2
[442fdcdd] + Measures v0.3.1
[e1d29d7a] + Missings v0.4.3
[e94cdb99] + MosaicViews v0.1.0
[efe261a4] + NFFT v0.4.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[5432bcbf] + PaddedViews v0.4.2
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.1
[91a5bcdd] + Plots v0.28.4
[f27b6e38] + Polynomials v0.6.0
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[6038ab10] + Rotations v0.13.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[06e1c1a7] + TiledIteration v0.2.3
[30578b45] + URIParser v0.4.0
[29a6e085] + Wavelets v0.9.0
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CMake ─→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Updating `/tmp/jl_mh4aLR/Project.toml`
[no changes]
Updating `/tmp/jl_mh4aLR/Manifest.toml`
[no changes]
Building Blosc ─→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Updating `/tmp/jl_3RLxPW/Project.toml`
[no changes]
Updating `/tmp/jl_3RLxPW/Manifest.toml`
[no changes]
Building HDF5 ──→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Updating `/tmp/jl_Am84J3/Project.toml`
[no changes]
Updating `/tmp/jl_Am84J3/Manifest.toml`
[no changes]
Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Updating `/tmp/jl_1gJ0ix/Project.toml`
[no changes]
Updating `/tmp/jl_1gJ0ix/Manifest.toml`
[no changes]
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Updating `/tmp/jl_gyBcX9/Project.toml`
[no changes]
Updating `/tmp/jl_gyBcX9/Manifest.toml`
[no changes]
Building Plots ─→ `~/.julia/packages/Plots/qZHsp/deps/build.log`
Updating `/tmp/jl_XR9CZB/Project.toml`
[no changes]
Updating `/tmp/jl_XR9CZB/Manifest.toml`
[no changes]
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_QbFdt5/Project.toml`
[no changes]
Updating `/tmp/jl_QbFdt5/Manifest.toml`
[no changes]
Testing MIRT
Updating `/tmp/jl_vkT6QG/Project.toml`
[no changes]
Updating `/tmp/jl_vkT6QG/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_vkT6QG/Project.toml`
[6e4b80f9] BenchmarkTools v0.4.3
[5ae59095] Colors v0.11.2
[717857b8] DSP v0.6.2
[4f61f5a4] FFTViews v0.3.0
[7a1cc6ca] FFTW v1.2.0
[5789e2e9] FileIO v1.2.1
[6a3955dd] ImageFiltering v0.6.9
[02fcd773] ImageTransformations v0.8.1
[a98d9a8b] Interpolations v0.12.6
[b964fa9f] LaTeXStrings v1.0.3
[7a12625a] LinearMaps v2.5.2
[599c1a8e] LinearMapsAA v0.3.0
[7035ae7a] MIRT v0.9.0
[274281c4] MIRTio v0.2.1
[e94cdb99] MosaicViews v0.1.0
[efe261a4] NFFT v0.4.0
[91a5bcdd] Plots v0.28.4
[189a3867] Reexport v0.2.0
[276daf66] SpecialFunctions v0.9.0
[29a6e085] Wavelets v0.9.0
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[8dfed614] Test
Test Summary: | Pass Total
MIRT:../data | 1 1
Test Summary: | Pass Total
MIRT:algorithm | 12 12
┌ Warning: fov: x range -0.5 0.5, cx=3, rx=1
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/fbp/ellipsoid_im.jl:324
┌ Warning: fov: y range -0.5 0.5, cy=3, ry=1
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/fbp/ellipsoid_im.jl:328
┌ Warning: fov: z range -0.5 0.5, cz=3, rz=1
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/fbp/ellipsoid_im.jl:333
MIRT_image_geom
nx::Int64 16
ny::Int64 16
dx::Float32 2.0
dy::Float32 -2.0
offset_x::Float32 0.0
offset_y::Float32 0.0
nz::Int64 0
dz::Float32 NaN
offset_z::Float32 0.0
mask::Array{Bool,N} where N
y points not sorted in ascending order
y points not sorted in ascending order
y points not sorted in ascending order
y points not sorted in ascending order
MIRT_sino_geom
how::Symbol
units::Symbol
nb::Int64 888
na::Int64 642
d::Float32 1.0239
orbit::Float32 360.0
orbit_start::Float32 0.0
offset::Float32 1.25
strip_width::Float32 1.0239
source_offset::Float32 0.0
dsd::Float32 949.075
dod::Float32 408.075
dfs::Float32 0.0
Test Summary: | Pass Total
MIRT:fbp | 51 51
Test Summary: | Pass Total
MIRT:io | 8 8
[ Info: 1D tests with Complex{Float32}
[ Info: 2D tests with Complex{Float32}
┌ Warning: magnitude at jim.jl 154 jim##kw():
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/plot/jim.jl:155
┌ Warning: magnitude at jim.jl 154 jim##kw():
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/plot/jim.jl:155
┌ Warning: magnitude at jim.jl 154 jim##kw():
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/plot/jim.jl:155
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
typeof(tmp) = Plots.Plot{Plots.GRBackend}
max_percent_diff(f2, s2) = 0.8241078453660797
max_percent_diff(f2, s2) = 2.4569255215209425e-8
max_percent_diff(f2, s2) = 2.7952325202493746
max_percent_diff(f2, s2) = 0
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
origin outside current window
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
auto-adjust Y tick marks
max_percent_diff(f3, s3) = 5.741301967425953
max_percent_diff(f3, s3) = 1.472517119802518
max_percent_diff(f3, s3) = 5.7147633417516515
max_percent_diff(f3, s3) = 0
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
invalid range
GKS: Rectangle definition is invalid in routine SET_WINDOW
GKS: Rectangle definition is invalid in routine CELLARRAY
auto-adjust Y tick marks
Test Summary: | Pass Total
MIRT:mri | 29 29
┌ Warning: converting Int64 to Complex{Float64}
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/nufft/nufft.jl:44
┌ Warning: converting Int64 to Complex{Float32}
└ @ MIRT ~/.julia/packages/MIRT/7oVYR/src/nufft/nufft.jl:44
Test Summary: | Pass Total
MIRT:nufft | 74 74
Test Summary: | Pass Total
MIRT:plot | 2 2
Test Summary: | Pass Total
MIRT:regularize | 7 7
Test Summary: | Pass Total
MIRT:system | 41 41
Normalization factor (matrix 2 / matrix 1): 2.0
Test Summary: | Pass Total
MIRT:utility | 43 43
Testing MIRT tests passed