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OMOPCDMCohortCreator.jl Change Log

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

[0.5.1] - June 17th, 2024

Added

  • Minor bump to update FunSQL dependency

    • Dropped support for FunSQL 0.11

    • Updated support for FunSQL 0.13 series

[0.5.0] - February 23rd, 2024

Patch release to add in some new features and fixes

Added

  • Added Getters for Drug Exposures

    • GetDrugExposureStartDate

    • GetDrugExposureEndDate

  • Misc

    • Minor fixes in GetPatientAgeGroup Function

  • Extensive test suite for new features

[0.4.0] - December 1st, 2023

Patch release to add in some new features and fixes

Added

  • Added Getters that return Cohort information

    • GetDatabaseCohorts

    • GetCohortSubjects

    • GetCohortSubjectEndDate

    • GetCohortSubjectStartDate

  • Misc

    • Changed GetDrugExposures to GetDrugExposureIDs

    • Added GetVisitProcedure in getters

  • Extensive test suite for new features

[0.3.0] - August 25th, 2023

New minor release to introduce some new functionalities and novel extensions of the API

Added

  • Update Implicit Function APIs to Accept and/or Mutate a DataFrame

    • Nearly every function can now accept DataFrames as a given input

  • New functions for drug queries:

    • GetDrugExposures

    • GetDrugConceptIDs

    • GetDrugAmounts

  • Extensive test suite for new features

Changed

  • Updated beginner tutorials

Fixed

  • Increased CodeCov across package

[0.2.2] - February 28th, 2023

Patch release to add in some new features and fixes

Added

  • Added Getter for visit dates
  • Upated and added tests

Changed

  • Small fix to Julia beginner tutorial

[0.2.1] - November 5th, 2022

Minor patch release that adjusted CI test coverage and fixed some documentation errors.

Changed

  • Lowered Julia compat requirement to support 1.6 (LTS)
  • CI deployment for Windows
  • CI deployment for OSX
  • CI only runs on Push now

Fixed

  • Adjusted minor bug in R Tutorial

[0.2.0] - October 23rd, 2022

Added

  • New tutorial on using OMOPCDMCohortCreator with R created
  • Getter functions added for Ethnicity and Database Year Range
  • Exported functions fully documented
  • Code coverage workflow
  • CI check for test suite
  • Extensive tests added across package
  • Improved API documentation
  • Added new badges for README
  • New Test dependencies Added

Changed

  • Removed Memoization as dependency
  • CI deployment for documentation

Fixed

  • Corrected bib references

[0.1.0] - August 8th, 2022

Huge update with new documentation, initial tests, and improved docstrings

Added

  • Deployed documentation to github pages
  • Updated README with badges and documentation source
  • Helper utilities across the package in src/helpers.jl
  • Tests for helpers
  • Started tests for getters
  • Todo bot for creating linkable issues
  • Project.toml
    • Added Dates dependency
    • Added TimeZones dependency
    • Added TimeZones dependency
    • Updated compat entries

Changed

  • Fixed GetPatientAgeGroup to get age according to three different methods

Fixed

  • Removed type definitions as that was causing premature issues
  • Determined alternative method to find current date/year based on OMOP CDM v5.4

[0.0.2] - August 3rd, 2022

Made some bugfixes, docstring updates, and feature improvements.

Added

  • Exports for filter functions were added

Changed

  • Type signatures were removed
    • Realized it was too premature to have them

Fixed

  • GetPatientVisits did not actually return visit ids
    • Updated to return ids from visit_occurrence_id versus visit_concept_id

Added

  • Exports for filter functions were added

Changed

  • Type signatures were removed
    • Realized it was too premature to have them

Fixed

  • GetPatientVisits did not actually return visit ids
    • Updated to return ids from visit_occurrence_id versus visit_concept_id