diff --git a/README.md b/README.md index ed70e79..ea7525e 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ This repository contains 3 major modules: ## **Current Version** -VesselBoost 0.9.1 +VesselBoost 0.9.4 ## **Requirements** - Docker / Singularity container @@ -38,9 +38,20 @@ VesselBoost, pre-trained models, and required software are packaged in software The Dockerhub container is available at Dockerhub. To download the container, run the following command: ``` -docker pull vnmd/vesselboost_0.9.1 +docker pull vnmd/vesselboost_0.9.4 ``` +### Neurodesk +To predict vessel segmentation using your data and the latest version of VesselBoost on Neurodesk, you can run the following code snippet: + +```bash +ml vesselboost +path_to_model=/cvmfs/neurodesk.ardc.edu.au/containers/vesselboost_0.9.4_20240404/vesselboost_0.9.4_20240404.simg/opt/VesselBoost/saved_models +prediction.py --ds_path /path/ --out_path /path/ --pretrained "$path_to_model"/manual_ep1000_1029 --prep_mode 4 +``` + +For more information, please check our [notebooks](https://github.com/KMarshallX/VesselBoost/tree/master/notebooks). + ## **Installation** This is a Python-based software package. To successfully run this project on your local machine, please follow the following steps to set up the necessary software environment.