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.environments.yaml.txt
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channels:
- conda-forge
- bioconda
- default
dependencies:
- multiqc
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- fastqc ==0.11.9
channels:
- bioconda
dependencies:
- jellyfish
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- picard ==2.22.1
- snakemake-wrapper-utils ==0.1.3
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- picard ==2.22.1
- r-base ==3.6.2
- snakemake-wrapper-utils ==0.1.3
channels:
- bioconda
dependencies:
- picard >=2.23
channels:
- bioconda
dependencies:
- qualimap
channels:
- bioconda
dependencies:
- sambamba
channels:
- conda-forge
- bioconda
dependencies:
- bcftools ==1.11
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- cutadapt ==3.4
channels:
- bioconda
- conda-forge
dependencies:
- samtools ==1.10
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- bwa ==0.7.17
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- bwa ==0.7.17
- samtools =1.12
- picard =2.25
channels:
- bioconda
dependencies:
- pybedtools
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- gatk4
channels:
- bioconda
dependencies:
- bcftools
- gatk4
channels:
- bioconda
dependencies:
- bedtools
channels:
- bioconda
dependencies:
- samtools
channels:
- conda-forge
- defaults
dependencies:
- perl
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- perl
- perl-text-nsp