Corrupt fix-sweave-exit-code.patch at R

[KaiLemke]

Issue description

Installing R fails, because fix-sweave-exit-code.patch cannot be applied:

applying patch /nix/store/wyfr6an0xj2iiwa8fkrryyzrrv5wnvnk-fix-sweave-exit-code.patch
patching file src/library/utils/R/Sweave.R
Hunk #1 FAILED at 1.
Hunk #2 FAILED at 452.
Hunk #3 FAILED at 577.
3 out of 3 hunks FAILED -- saving rejects to file src/library/utils/R/Sweave.R.rej
builder for ‘/nix/store/y6n3klamjnqnw2mx6rlia5f7829amqnb-R-3.3.3.drv’ failed with exit code 1

Steps to reproduce

add pkgs.R to configuration.nix
nixos-rebuild test --show-trace

Technical details

• System: NixOS: 17.03.1098.a162c6c828 (Gorilla), stable, 64 Bit
• Sandboxing enabled: false

[JayVii]

I can confirm. Have the same issue:

unpacking source archive /nix/store/ahvpik8cyjhgirc6zb14hhhc4l554lvh-R-3.3.3.tar.gz
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0source root is R-3.3.3
  setting SOURCE_DATE_EPOCH to timestamp 1488788159 of file R-3.3.3/src/library/utils/inst/doc/Sweave.pdf
  patching sources
  applying patch /nix/store/qnbw3qijmgcyldy30wf66bxyq5cwasbn-no-usr-local-search-paths.patch
  patching file configure
  Hunk #1 succeeded at 3731 (offset -69 lines).
  applying patch /nix/store/wyfr6an0xj2iiwa8fkrryyzrrv5wnvnk-fix-sweave-exit-code.patch
  patching file src/library/utils/R/Sweave.R
  Hunk #1 FAILED at 1.
  Hunk #2 FAILED at 452.
  Hunk #3 FAILED at 577.
  3 out of 3 hunks FAILED -- saving rejects to file src/library/utils/R/Sweave.R.rej
  builder for ‘/nix/store/y6n3klamjnqnw2mx6rlia5f7829amqnb-R-3.3.3.drv’ failed with exit code 1
  )

EDIT: R-3.4.0 from the unstable branch installs and works fine. so either commit 5e5d16f or d16c38a fixed it.

[pschuprikov]

Comparing master and 17.03 it seems that commit d16c38a is missing from the latter. Presumably, the patch was intended for version 3.4.0. @peti, could you, please, check?

[peti]

Fixed by 05b2da8.