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Add transform to handle empty box as training data #6170

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merged 25 commits into from
Mar 25, 2023

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Can-Zhao
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@Can-Zhao Can-Zhao commented Mar 18, 2023

Fixes #5990 .

Description

Add transforms to convert empty box with shape (0,M) or (0,) into (0,4) or (0,6).
Provide format checking inside detector so users can know how to solve the format issue with empty box input.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@Can-Zhao Can-Zhao force-pushed the negbox branch 3 times, most recently from ed52ac9 to 7a92b22 Compare March 22, 2023 18:48
@Can-Zhao Can-Zhao marked this pull request as ready for review March 22, 2023 19:36
@Can-Zhao Can-Zhao requested review from wyli and Nic-Ma March 22, 2023 20:02
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wyli commented Mar 24, 2023

/build

@wyli wyli enabled auto-merge (squash) March 24, 2023 11:56
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wyli commented Mar 24, 2023

/build

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wyli commented Mar 25, 2023

/build

@wyli wyli merged commit c0aace5 into Project-MONAI:dev Mar 25, 2023
@Can-Zhao Can-Zhao deleted the negbox branch March 25, 2023 19:28
jak0bw pushed a commit to jak0bw/MONAI that referenced this pull request Mar 28, 2023
Fixes Project-MONAI#5990 .

### Description

Add transforms to convert empty box with shape (0,M) or (0,) into (0,4)
or (0,6).
Provide format checking inside detector so users can know how to solve
the format issue with empty box input.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: Can Zhao <[email protected]>
jak0bw pushed a commit to jak0bw/MONAI that referenced this pull request Mar 28, 2023
Fixes Project-MONAI#5990 .

### Description

Add transforms to convert empty box with shape (0,M) or (0,) into (0,4)
or (0,6).
Provide format checking inside detector so users can know how to solve
the format issue with empty box input.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: Can Zhao <[email protected]>
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ConvertBoxToStandardModed cannot handle empty boxes
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