From ade9a1c96d5c5141cb29f65b1994eac73f4c3ef0 Mon Sep 17 00:00:00 2001 From: Ashley Sommer Date: Mon, 11 Nov 2024 10:27:54 +1000 Subject: [PATCH 01/30] Can't turn off auto-updates for Black version in pre-commit-ci, so change it to quarterly, so the versions aren't updated so often. (#2975) Also bump to latest ruff version. --- .pre-commit-config.yaml | 4 ++-- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 58cdd2e50..bca569561 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,14 +1,14 @@ --- ci: # https://pre-commit.ci/#configuration - autoupdate_schedule: weekly + autoupdate_schedule: quarterly autofix_prs: false # https://pre-commit.com/#adding-pre-commit-plugins-to-your-project repos: - repo: https://github.com/astral-sh/ruff-pre-commit # WARNING: Ruff version should be the same as in `pyproject.toml` - rev: v0.7.1 + rev: v0.7.2 hooks: - id: ruff args: ["--fix"] diff --git a/poetry.lock b/poetry.lock index 75aa28044..4c8c3aa18 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1495,4 +1495,4 @@ orjson = ["orjson"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "a4e5382d42c7ab09d4191493411f893461b534d92a05344cde1077fe29b5f4b3" +content-hash = "bbe86c8ee32a768ab2bbcdbccf0bed6ace146a23ede0dedbe5887d1d4d1a661b" diff --git a/pyproject.toml b/pyproject.toml index e99fad09e..ba06a94b8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -73,7 +73,7 @@ sphinx-autodoc-typehints = ">=2.3.0,<2.4.0" typing-extensions = "^4.11.0" [tool.poetry.group.lint.dependencies] -ruff = ">=0.7.1,<0.8.0" +ruff = ">=0.7.2,<1" [tool.poetry.extras] berkeleydb = ["berkeleydb"] From 70070b156ce896a712587c2ce1cf7f9ac8ee5ec7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 12 Nov 2024 07:15:56 +1000 Subject: [PATCH 02/30] build(deps-dev): bump ruff from 0.7.2 to 0.7.3 (#2979) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.2 to 0.7.3. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.7.2...0.7.3) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 40 ++++++++++++++++++++-------------------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4c8c3aa18..ac380ed51 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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[Release notes](https://github.com/pypa/wheel/releases) - [Changelog](https://github.com/pypa/wheel/blob/main/docs/news.rst) - [Commits](https://github.com/pypa/wheel/compare/0.44.0...0.45.0) --- updated-dependencies: - dependency-name: wheel dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Ashley Sommer --- poetry.lock | 8 ++++---- pyproject.toml | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index ac380ed51..57f4c4c2f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1454,13 +1454,13 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "wheel" -version = "0.44.0" +version = "0.45.0" description = "A built-package format for Python" optional = false python-versions = ">=3.8" files = [ - {file = "wheel-0.44.0-py3-none-any.whl", hash = "sha256:2376a90c98cc337d18623527a97c31797bd02bad0033d41547043a1cbfbe448f"}, - {file = "wheel-0.44.0.tar.gz", hash = "sha256:a29c3f2817e95ab89aa4660681ad547c0e9547f20e75b0562fe7723c9a2a9d49"}, + {file = "wheel-0.45.0-py3-none-any.whl", hash = "sha256:52f0baa5e6522155090a09c6bd95718cc46956d1b51d537ea5454249edb671c7"}, + {file = "wheel-0.45.0.tar.gz", hash = "sha256:a57353941a3183b3d5365346b567a260a0602a0f8a635926a7dede41b94c674a"}, ] [package.extras] @@ -1495,4 +1495,4 @@ orjson = ["orjson"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "bbe86c8ee32a768ab2bbcdbccf0bed6ace146a23ede0dedbe5887d1d4d1a661b" +content-hash = "c9bb02e249e125b79b312c26d1284c4a46670840886daf41ee2a0220d7090edd" diff --git a/pyproject.toml b/pyproject.toml index ba06a94b8..c37546760 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -63,7 +63,7 @@ pytest-cov = ">=4,<7" coverage = {version = "^7.0.1", extras = ["toml"]} types-setuptools = ">=68.0.0.3,<72.0.0.0" setuptools = ">=68,<72" -wheel = ">=0.42,<0.45" +wheel = ">=0.42,<0.46" [tool.poetry.group.docs.dependencies] sphinx = ">=7.1.2,<8" From 068044276eecbbbb5214d21b9f749f6be259a952 Mon Sep 17 00:00:00 2001 From: Ashley Sommer Date: Mon, 18 Nov 2024 16:29:44 +1000 Subject: [PATCH 04/30] Fix tuple typing mistake in triples_choices (#2987) --- rdflib/graph.py | 18 +++++++++--------- rdflib/plugins/stores/sparqlstore.py | 6 +++--- rdflib/store.py | 12 ++++++------ 3 files changed, 18 insertions(+), 18 deletions(-) diff --git a/rdflib/graph.py b/rdflib/graph.py index f250d9fa3..1e2c71b36 100644 --- a/rdflib/graph.py +++ b/rdflib/graph.py @@ -966,19 +966,19 @@ def triples_choices( self, triple: ( tuple[ - list[_SubjectType] | tuple[_SubjectType], + list[_SubjectType] | tuple[_SubjectType, ...], _PredicateType, _ObjectType | None, ] | tuple[ _SubjectType | None, - list[_PredicateType] | tuple[_PredicateType], + list[_PredicateType] | tuple[_PredicateType, ...], _ObjectType | None, ] | tuple[ _SubjectType | None, _PredicateType, - list[_ObjectType] | tuple[_ObjectType], + list[_ObjectType] | tuple[_ObjectType, ...], ] ), context: _ContextType | None = None, @@ -2208,19 +2208,19 @@ def triples_choices( self, triple: ( tuple[ - list[_SubjectType] | tuple[_SubjectType], + list[_SubjectType] | tuple[_SubjectType, ...], _PredicateType, _ObjectType | None, ] | tuple[ _SubjectType | None, - list[_PredicateType] | tuple[_PredicateType], + list[_PredicateType] | tuple[_PredicateType, ...], _ObjectType | None, ] | tuple[ _SubjectType | None, _PredicateType, - list[_ObjectType] | tuple[_ObjectType], + list[_ObjectType] | tuple[_ObjectType, ...], ] ), context: _ContextType | None = None, @@ -2962,19 +2962,19 @@ def triples_choices( self, triple: ( tuple[ - list[_SubjectType] | tuple[_SubjectType], + list[_SubjectType] | tuple[_SubjectType, ...], _PredicateType, _ObjectType | None, ] | tuple[ _SubjectType | None, - list[_PredicateType] | tuple[_PredicateType], + list[_PredicateType] | tuple[_PredicateType, ...], _ObjectType | None, ] | tuple[ _SubjectType | None, _PredicateType, - list[_ObjectType] | tuple[_ObjectType], + list[_ObjectType] | tuple[_ObjectType, ...], ] ), context: _ContextType | None = None, diff --git a/rdflib/plugins/stores/sparqlstore.py b/rdflib/plugins/stores/sparqlstore.py index d6e5f1d77..b58e967ac 100644 --- a/rdflib/plugins/stores/sparqlstore.py +++ b/rdflib/plugins/stores/sparqlstore.py @@ -408,19 +408,19 @@ def triples_choices( self, _: ( tuple[ - list[_SubjectType] | tuple[_SubjectType], + list[_SubjectType] | tuple[_SubjectType, ...], _PredicateType, _ObjectType | None, ] | tuple[ _SubjectType | None, - list[_PredicateType] | tuple[_PredicateType], + list[_PredicateType] | tuple[_PredicateType, ...], _ObjectType | None, ] | tuple[ _SubjectType | None, _PredicateType, - list[_ObjectType] | tuple[_ObjectType], + list[_ObjectType] | tuple[_ObjectType, ...], ] ), context: _ContextType | None = None, diff --git a/rdflib/store.py b/rdflib/store.py index 9402746df..96a16956b 100644 --- a/rdflib/store.py +++ b/rdflib/store.py @@ -271,19 +271,19 @@ def triples_choices( self, triple: ( tuple[ - list[_SubjectType] | tuple[_SubjectType], + list[_SubjectType] | tuple[_SubjectType, ...], _PredicateType, _ObjectType | None, ] | tuple[ _SubjectType | None, - list[_PredicateType] | tuple[_PredicateType], + list[_PredicateType] | tuple[_PredicateType, ...], _ObjectType | None, ] | tuple[ _SubjectType | None, _PredicateType, - list[_ObjectType] | tuple[_ObjectType], + list[_ObjectType] | tuple[_ObjectType, ...], ] ), context: _ContextType | None = None, @@ -301,9 +301,9 @@ def triples_choices( time from the default 'fallback' implementation, which will iterate over each term in the list and dispatch to triples """ - subject: _SubjectType | list[_SubjectType] | tuple[_SubjectType] | None - predicate: _PredicateType | list[_PredicateType] | tuple[_PredicateType] - object_: _ObjectType | list[_ObjectType] | tuple[_ObjectType] | None + subject: _SubjectType | list[_SubjectType] | tuple[_SubjectType, ...] | None + predicate: _PredicateType | list[_PredicateType] | tuple[_PredicateType, ...] + object_: _ObjectType | list[_ObjectType] | tuple[_ObjectType, ...] | None subject, predicate, object_ = triple if isinstance(object_, (list, tuple)): # MyPy thinks these are unreachable due to the triple pattern signature. From a9e30d3a78a85c1215386710b510ee7c1cfb679a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 19 Nov 2024 08:54:22 +1000 Subject: [PATCH 05/30] build(deps): bump library/python in /docker/unstable (#2986) Bumps library/python from `751d8be` to `4efa69b`. --- updated-dependencies: - dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/unstable/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/unstable/Dockerfile b/docker/unstable/Dockerfile index 16e457559..bc064d4f3 100644 --- a/docker/unstable/Dockerfile +++ b/docker/unstable/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.0-slim@sha256:751d8bece269ba9e672b3f2226050e7e6fb3f3da3408b5dcb5d415a054fcb061 +FROM docker.io/library/python:3.13.0-slim@sha256:4efa69bf17cfbd83a9942e60e2642335c3b397448e00410063a0421f9727c4c4 # This file is generated from docker:unstable in Taskfile.yml COPY var/requirements.txt /var/tmp/build/ From 15ebc8826c2f8a3d4f2984977fba635e3780d1b4 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 27 Nov 2024 12:06:07 +1000 Subject: [PATCH 06/30] build(deps-dev): bump ruff from 0.7.3 to 0.8.0 (#2994) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.7.3 to 0.8.0. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.7.3...0.8.0) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-minor ... 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[Release notes](https://github.com/ijl/orjson/releases) - [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md) - [Commits](https://github.com/ijl/orjson/compare/3.10.11...3.10.12) --- updated-dependencies: - dependency-name: orjson dependency-type: direct:production update-type: version-update:semver-patch ... 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0c2c59e1756ca6f8e0a0713a0ab478c731131fd2 Mon Sep 17 00:00:00 2001 From: joecrowleygaia <142864129+joecrowleygaia@users.noreply.github.com> Date: Wed, 27 Nov 2024 13:05:09 +0800 Subject: [PATCH 09/30] added Node as an exported name from the root package location. Updated linting commands section in the developer section to use ruff check. (#2981) --- docs/developers.rst | 11 ++++------- rdflib/__init__.py | 3 ++- 2 files changed, 6 insertions(+), 8 deletions(-) diff --git a/docs/developers.rst b/docs/developers.rst index 4a9e2266b..5b2bb47cb 100644 --- a/docs/developers.rst +++ b/docs/developers.rst @@ -231,20 +231,17 @@ our black.toml config file: poetry run black . -Check style and conventions with `flake8 `_: +Check style and conventions with `ruff `_: .. code-block:: bash - poetry run flake8 rdflib + poetry run ruff check -We also provide a `flakeheaven `_ -baseline that ignores existing flake8 errors and only reports on newly -introduced flake8 errors: +Any issues that are found can potentially be fixed automatically using: .. code-block:: bash - poetry run flakeheaven - + poetry run ruff check --fix Check types with `mypy `_: diff --git a/rdflib/__init__.py b/rdflib/__init__.py index 0c40cd7a4..843b614e4 100644 --- a/rdflib/__init__.py +++ b/rdflib/__init__.py @@ -59,6 +59,7 @@ "BNode", "IdentifiedNode", "Literal", + "Node", "Variable", "Namespace", "Dataset", @@ -195,7 +196,7 @@ XSD, Namespace, ) -from rdflib.term import BNode, IdentifiedNode, Literal, URIRef, Variable +from rdflib.term import BNode, IdentifiedNode, Literal, Node, URIRef, Variable from rdflib import plugin, query, util # isort:skip from rdflib.container import * # isort:skip # noqa: F403 From aff4dedbc50eb8e8c5dde68958e9fd1e019d6328 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 27 Nov 2024 15:05:29 +1000 Subject: [PATCH 10/30] build(deps-dev): bump wheel from 0.45.0 to 0.45.1 (#2992) Bumps [wheel](https://github.com/pypa/wheel) from 0.45.0 to 0.45.1. - [Release notes](https://github.com/pypa/wheel/releases) - [Changelog](https://github.com/pypa/wheel/blob/main/docs/news.rst) - [Commits](https://github.com/pypa/wheel/compare/0.45.0...0.45.1) --- updated-dependencies: - dependency-name: wheel dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nicholas Car --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0aed788bf..a5fe5772f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1471,13 +1471,13 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "wheel" -version = "0.45.0" +version = "0.45.1" description = "A built-package format for Python" optional = false python-versions = ">=3.8" files = [ - {file = "wheel-0.45.0-py3-none-any.whl", hash = "sha256:52f0baa5e6522155090a09c6bd95718cc46956d1b51d537ea5454249edb671c7"}, - {file = "wheel-0.45.0.tar.gz", hash = "sha256:a57353941a3183b3d5365346b567a260a0602a0f8a635926a7dede41b94c674a"}, + {file = "wheel-0.45.1-py3-none-any.whl", hash = "sha256:708e7481cc80179af0e556bbf0cc00b8444c7321e2700b8d8580231d13017248"}, + {file = "wheel-0.45.1.tar.gz", hash = "sha256:661e1abd9198507b1409a20c02106d9670b2576e916d58f520316666abca6729"}, ] [package.extras] From 08dd4b79f84638250529adb650c75a3305bad66d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 27 Nov 2024 15:06:01 +1000 Subject: [PATCH 11/30] build(deps): bump library/python in /docker/latest (#2980) Bumps library/python from `2ec5a4a` to `751d8be`. --- updated-dependencies: - dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/latest/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/latest/Dockerfile b/docker/latest/Dockerfile index b9cb9de63..7db16e4b5 100644 --- a/docker/latest/Dockerfile +++ b/docker/latest/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.0-slim@sha256:2ec5a4a5c3e919570f57675471f081d6299668d909feabd8d4803c6c61af666c +FROM docker.io/library/python:3.13.0-slim@sha256:751d8bece269ba9e672b3f2226050e7e6fb3f3da3408b5dcb5d415a054fcb061 COPY docker/latest/requirements.txt /var/tmp/build/ From 28a61908c22b7d2f94975197256772b2a00eb8df Mon Sep 17 00:00:00 2001 From: Edmond Chuc <37032744+edmondchuc@users.noreply.github.com> Date: Fri, 29 Nov 2024 13:38:10 +1000 Subject: [PATCH 12/30] feat: sort longturtle blank nodes (#2997) * feat: sort longturtle blank nodes in the object position by their cbd string * fix: https://github.com/RDFLib/rdflib/issues/2767 --- rdflib/plugins/serializers/longturtle.py | 29 +++++++ test/data/longturtle/longturtle-target.ttl | 74 +++++++++++++++++ .../test_serializer_longturtle.py | 82 ++----------------- 3 files changed, 108 insertions(+), 77 deletions(-) create mode 100644 test/data/longturtle/longturtle-target.ttl diff --git a/rdflib/plugins/serializers/longturtle.py b/rdflib/plugins/serializers/longturtle.py index 29e282d78..f596a7ded 100644 --- a/rdflib/plugins/serializers/longturtle.py +++ b/rdflib/plugins/serializers/longturtle.py @@ -293,7 +293,34 @@ def predicateList(self, subject, newline=False): def verb(self, node, newline=False): self.path(node, VERB, newline) + def sortObjects( + self, values: list[URIRef | BNode | Literal] + ) -> list[URIRef | BNode | Literal]: + """ + Perform a sort on the values where each value is a blank node. Grab the CBD of the + blank node and sort it by its longturtle serialization value. + + Identified nodes come first and the sorted blank nodes are tacked on after. + """ + bnode_map: dict[BNode, list[str]] = {} + objects = [] + for value in values: + if isinstance(value, BNode): + bnode_map[value] = [] + else: + objects.append(value) + + for bnode in bnode_map: + cbd = self.store.cbd(bnode).serialize(format="longturtle") + bnode_map[bnode].append(cbd) + + sorted_bnodes = sorted( + [(k, v) for k, v in bnode_map.items()], key=lambda x: x[1] + ) + return objects + [x[0] for x in sorted_bnodes] + def objectList(self, objects): + objects = self.sortObjects(objects) count = len(objects) if count == 0: return @@ -303,6 +330,8 @@ def objectList(self, objects): if count > 1: if not isinstance(objects[0], BNode): self.write("\n" + self.indent(1)) + else: + self.write(" ") first_nl = True self.path(objects[0], OBJECT, newline=first_nl) for obj in objects[1:]: diff --git a/test/data/longturtle/longturtle-target.ttl b/test/data/longturtle/longturtle-target.ttl new file mode 100644 index 000000000..329f2ca0c --- /dev/null +++ b/test/data/longturtle/longturtle-target.ttl @@ -0,0 +1,74 @@ +PREFIX cn: +PREFIX ex: +PREFIX geo: +PREFIX rdf: +PREFIX sdo: +PREFIX xsd: + +ex:nicholas + a sdo:Person ; + sdo:age 41 ; + sdo:alternateName + "N.J. Car" , + "Nick Car" , + [ + sdo:name "Dr N.J. Car" ; + ] ; + sdo:name + [ + a cn:CompoundName ; + sdo:hasPart + [ + a cn:CompoundName ; + rdf:value "John" ; + ] , + [ + a cn:CompoundName ; + rdf:value "Nicholas" ; + ] , + [ + a cn:CompoundName ; + sdo:hasPart + [ + a cn:CompoundName ; + rdf:value "Car" ; + ] , + [ + a cn:CompoundName ; + rdf:value "Maxov" ; + ] ; + ] ; + ] ; + sdo:worksFor ; +. + + + a sdo:Organization ; + sdo:location ; +. + + + a sdo:Place ; + sdo:address + [ + a sdo:PostalAddress ; + sdo:addressCountry + [ + sdo:identifier "au" ; + sdo:name "Australia" ; + ] ; + sdo:addressLocality "Shorncliffe" ; + sdo:addressRegion "QLD" ; + sdo:postalCode 4017 ; + sdo:streetAddress ( + 72 + "Yundah" + "Street" + ) ; + ] ; + sdo:geo + [ + sdo:polygon "POLYGON((153.082403 -27.325801, 153.08241 -27.32582, 153.082943 -27.325612, 153.083010 -27.325742, 153.083543 -27.325521, 153.083456 -27.325365, 153.082403 -27.325801))"^^geo:wktLiteral ; + ] ; + sdo:name "KurrawongAI HQ" ; +. diff --git a/test/test_serializers/test_serializer_longturtle.py b/test/test_serializers/test_serializer_longturtle.py index 847d506ab..c1761b6da 100644 --- a/test/test_serializers/test_serializer_longturtle.py +++ b/test/test_serializers/test_serializer_longturtle.py @@ -1,5 +1,5 @@ import difflib -from textwrap import dedent +from pathlib import Path from rdflib import Graph, Namespace from rdflib.namespace import GEO, SDO @@ -170,83 +170,11 @@ def test_longturtle(): output = g.serialize(format="longturtle") # fix the target - target = dedent( - """ PREFIX cn: - PREFIX ex: - PREFIX geo: - PREFIX rdf: - PREFIX sdo: - PREFIX xsd: + current_dir = Path.cwd() # Get the current directory + target_file_path = current_dir / "test/data/longturtle" / "longturtle-target.ttl" - ex:nicholas - a sdo:Person ; - sdo:age 41 ; - sdo:alternateName - [ - sdo:name "Dr N.J. Car" ; - ] , - "N.J. Car" , - "Nick Car" ; - sdo:name - [ - a cn:CompoundName ; - sdo:hasPart - [ - a cn:CompoundName ; - rdf:value "Nicholas" ; - ] , - [ - a cn:CompoundName ; - rdf:value "John" ; - ] , - [ - a cn:CompoundName ; - sdo:hasPart - [ - a cn:CompoundName ; - rdf:value "Car" ; - ] , - [ - a cn:CompoundName ; - rdf:value "Maxov" ; - ] ; - ] ; - ] ; - sdo:worksFor ; - . - - - a sdo:Organization ; - sdo:location ; - . - - - a sdo:Place ; - sdo:address - [ - a sdo:PostalAddress ; - sdo:addressCountry - [ - sdo:identifier "au" ; - sdo:name "Australia" ; - ] ; - sdo:addressLocality "Shorncliffe" ; - sdo:addressRegion "QLD" ; - sdo:postalCode 4017 ; - sdo:streetAddress ( - 72 - "Yundah" - "Street" - ) ; - ] ; - sdo:geo - [ - sdo:polygon "POLYGON((153.082403 -27.325801, 153.08241 -27.32582, 153.082943 -27.325612, 153.083010 -27.325742, 153.083543 -27.325521, 153.083456 -27.325365, 153.082403 -27.325801))"^^geo:wktLiteral ; - ] ; - sdo:name "KurrawongAI HQ" ; - . - """ - ) + with open(target_file_path, encoding="utf-8") as file: + target = file.read() # compare output to target # - any differences will produce output From 507e1c338f10d109bc325d2a9d5c49283b795be8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 10 Dec 2024 08:53:37 +1000 Subject: [PATCH 13/30] build(deps-dev): bump pytest from 8.3.3 to 8.3.4 (#2999) Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.3 to 8.3.4. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.3.3...8.3.4) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5fe5772f..388cb0f8e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1080,13 +1080,13 @@ files = [ [[package]] name = "pytest" -version = "8.3.3" +version = "8.3.4" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" files = [ - {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"}, - {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"}, + {file = "pytest-8.3.4-py3-none-any.whl", hash = "sha256:50e16d954148559c9a74109af1eaf0c945ba2d8f30f0a3d3335edde19788b6f6"}, + {file = "pytest-8.3.4.tar.gz", hash = "sha256:965370d062bce11e73868e0335abac31b4d3de0e82f4007408d242b4f8610761"}, ] [package.dependencies] From 336aaae88a34c2c24971da23a7ef17dbd24298aa Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 10 Dec 2024 08:53:50 +1000 Subject: [PATCH 14/30] build(deps-dev): bump poetry from 1.8.4 to 1.8.5 (#3001) Bumps [poetry](https://github.com/python-poetry/poetry) from 1.8.4 to 1.8.5. - [Release notes](https://github.com/python-poetry/poetry/releases) - [Changelog](https://github.com/python-poetry/poetry/blob/1.8.5/CHANGELOG.md) - [Commits](https://github.com/python-poetry/poetry/compare/1.8.4...1.8.5) --- updated-dependencies: - dependency-name: poetry dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- devtools/requirements-poetry.in | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/devtools/requirements-poetry.in b/devtools/requirements-poetry.in index 1bf7b707a..7ba51be53 100644 --- a/devtools/requirements-poetry.in +++ b/devtools/requirements-poetry.in @@ -1,3 +1,3 @@ # Fixing this here as readthedocs can't use the compiled requirements-poetry.txt # due to conflicts. -poetry==1.8.4 +poetry==1.8.5 From f7d1d3525bb49d800e6149447aaceab197e6d12a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 10 Dec 2024 08:54:03 +1000 Subject: [PATCH 15/30] build(deps-dev): bump coverage from 7.6.8 to 7.6.9 (#3002) Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.6.8 to 7.6.9. - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/7.6.8...7.6.9) --- updated-dependencies: - dependency-name: coverage dependency-type: direct:development update-type: version-update:semver-patch ... 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dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/unstable/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/unstable/Dockerfile b/docker/unstable/Dockerfile index bc064d4f3..7270e795d 100644 --- a/docker/unstable/Dockerfile +++ b/docker/unstable/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.0-slim@sha256:4efa69bf17cfbd83a9942e60e2642335c3b397448e00410063a0421f9727c4c4 +FROM docker.io/library/python:3.13.1-slim@sha256:f41a75c9cee9391c09e0139f7b49d4b1fbb119944ec740ecce4040626dc07bed # This file is generated from docker:unstable in Taskfile.yml COPY var/requirements.txt /var/tmp/build/ From e8f61d4b5019040f097e560c3c1c8ecb41dd3fac Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 10 Dec 2024 08:54:46 +1000 Subject: [PATCH 18/30] build(deps): bump library/python in /docker/latest (#3005) Bumps library/python from 3.13.0-slim to 3.13.1-slim. --- updated-dependencies: - dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/latest/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/latest/Dockerfile b/docker/latest/Dockerfile index 7db16e4b5..3faf58d8e 100644 --- a/docker/latest/Dockerfile +++ b/docker/latest/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.0-slim@sha256:751d8bece269ba9e672b3f2226050e7e6fb3f3da3408b5dcb5d415a054fcb061 +FROM docker.io/library/python:3.13.1-slim@sha256:f41a75c9cee9391c09e0139f7b49d4b1fbb119944ec740ecce4040626dc07bed COPY docker/latest/requirements.txt /var/tmp/build/ From 77e6b8369ba6ce8c86c70d4bd147dfd2e390d077 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 16 Dec 2024 17:05:51 +1000 Subject: [PATCH 19/30] build(deps-dev): bump ruff from 0.8.2 to 0.8.3 (#3010) Bumps [ruff](https://github.com/astral-sh/ruff) from 0.8.2 to 0.8.3. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.8.2...0.8.3) --- updated-dependencies: - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-patch ... 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dependency-name: berkeleydb dependency-type: direct:production update-type: version-update:semver-patch ... 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dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/latest/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/latest/Dockerfile b/docker/latest/Dockerfile index 3faf58d8e..262b1a8b4 100644 --- a/docker/latest/Dockerfile +++ b/docker/latest/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.1-slim@sha256:f41a75c9cee9391c09e0139f7b49d4b1fbb119944ec740ecce4040626dc07bed +FROM docker.io/library/python:3.13.1-slim@sha256:1127090f9fff0b8e7c3a1367855ef8a3299472d2c9ed122948a576c39addeaf1 COPY docker/latest/requirements.txt /var/tmp/build/ From ac405f7077d233619cd8c6c96cc5c1c333f5661a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 2 Jan 2025 13:11:38 +1000 Subject: [PATCH 23/30] build(deps): bump library/python in /docker/unstable (#3019) Bumps library/python from `f41a75c` to `1127090`. --- updated-dependencies: - dependency-name: library/python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- docker/unstable/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/unstable/Dockerfile b/docker/unstable/Dockerfile index 7270e795d..a01261be3 100644 --- a/docker/unstable/Dockerfile +++ b/docker/unstable/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.13.1-slim@sha256:f41a75c9cee9391c09e0139f7b49d4b1fbb119944ec740ecce4040626dc07bed +FROM docker.io/library/python:3.13.1-slim@sha256:1127090f9fff0b8e7c3a1367855ef8a3299472d2c9ed122948a576c39addeaf1 # This file is generated from docker:unstable in Taskfile.yml COPY var/requirements.txt /var/tmp/build/ From ff828db468f3ffded625c350d01cd4a011d1019f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 2 Jan 2025 13:11:55 +1000 Subject: [PATCH 24/30] build(deps-dev): bump coverage from 7.6.9 to 7.6.10 (#3017) Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.6.9 to 7.6.10. - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/7.6.9...7.6.10) --- updated-dependencies: - dependency-name: coverage dependency-type: direct:development update-type: version-update:semver-patch ... 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[Release notes](https://github.com/pyparsing/pyparsing/releases) - [Changelog](https://github.com/pyparsing/pyparsing/blob/master/CHANGES) - [Commits](https://github.com/pyparsing/pyparsing/compare/3.2.0...3.2.1) --- updated-dependencies: - dependency-name: pyparsing dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 690b56800..b397e69a0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1055,13 +1055,13 @@ windows-terminal = ["colorama (>=0.4.6)"] [[package]] name = "pyparsing" -version = "3.2.0" +version = "3.2.1" description = "pyparsing module - Classes and methods to define and execute parsing grammars" optional = false python-versions = ">=3.9" files = [ - {file = "pyparsing-3.2.0-py3-none-any.whl", hash = "sha256:93d9577b88da0bbea8cc8334ee8b918ed014968fd2ec383e868fb8afb1ccef84"}, - {file = "pyparsing-3.2.0.tar.gz", hash = "sha256:cbf74e27246d595d9a74b186b810f6fbb86726dbf3b9532efb343f6d7294fe9c"}, + {file = "pyparsing-3.2.1-py3-none-any.whl", hash = "sha256:506ff4f4386c4cec0590ec19e6302d3aedb992fdc02c761e90416f158dacf8e1"}, + {file = "pyparsing-3.2.1.tar.gz", hash = "sha256:61980854fd66de3a90028d679a954d5f2623e83144b5afe5ee86f43d762e5f0a"}, ] [package.extras] From 182c3ba1a815b86f849ab7be6be5f4be9f289c23 Mon Sep 17 00:00:00 2001 From: Edmond Chuc <37032744+edmondchuc@users.noreply.github.com> Date: Mon, 6 Jan 2025 16:01:02 +1000 Subject: [PATCH 28/30] feat: deterministic longturtle serialisation using RDF canonicalization + n-triples sort (#3008) * feat: use the RGDA1 canonicalization algorithm + lexical n-triples sort to produce deterministic longturtle serialisation * chore: normalise usage of format * chore: apply black * fix: double up of semicolons when subject is a blank node --- rdflib/plugins/serializers/longturtle.py | 42 ++----- test/data/longturtle/longturtle-target.ttl | 82 ++++++------ .../test_serializer_longturtle_sort.py | 117 ++++++++++++++++++ 3 files changed, 170 insertions(+), 71 deletions(-) create mode 100644 test/test_serializers/test_serializer_longturtle_sort.py diff --git a/rdflib/plugins/serializers/longturtle.py b/rdflib/plugins/serializers/longturtle.py index f596a7ded..8de1e52a2 100644 --- a/rdflib/plugins/serializers/longturtle.py +++ b/rdflib/plugins/serializers/longturtle.py @@ -20,7 +20,9 @@ from typing import IO, Any, Optional +from rdflib.compare import to_canonical_graph from rdflib.exceptions import Error +from rdflib.graph import Graph from rdflib.namespace import RDF from rdflib.term import BNode, Literal, URIRef @@ -42,7 +44,16 @@ class LongTurtleSerializer(RecursiveSerializer): def __init__(self, store): self._ns_rewrite = {} - super(LongTurtleSerializer, self).__init__(store) + store = to_canonical_graph(store) + content = store.serialize(format="application/n-triples") + lines = content.split("\n") + lines.sort() + graph = Graph() + graph.parse( + data="\n".join(lines), format="application/n-triples", skolemize=True + ) + graph = graph.de_skolemize() + super(LongTurtleSerializer, self).__init__(graph) self.keywords = {RDF.type: "a"} self.reset() self.stream = None @@ -186,7 +197,7 @@ def s_squared(self, subject): return False self.write("\n" + self.indent() + "[]") self.predicateList(subject, newline=False) - self.write(" ;\n.") + self.write("\n.") return True def path(self, node, position, newline=False): @@ -293,34 +304,7 @@ def predicateList(self, subject, newline=False): def verb(self, node, newline=False): self.path(node, VERB, newline) - def sortObjects( - self, values: list[URIRef | BNode | Literal] - ) -> list[URIRef | BNode | Literal]: - """ - Perform a sort on the values where each value is a blank node. Grab the CBD of the - blank node and sort it by its longturtle serialization value. - - Identified nodes come first and the sorted blank nodes are tacked on after. - """ - bnode_map: dict[BNode, list[str]] = {} - objects = [] - for value in values: - if isinstance(value, BNode): - bnode_map[value] = [] - else: - objects.append(value) - - for bnode in bnode_map: - cbd = self.store.cbd(bnode).serialize(format="longturtle") - bnode_map[bnode].append(cbd) - - sorted_bnodes = sorted( - [(k, v) for k, v in bnode_map.items()], key=lambda x: x[1] - ) - return objects + [x[0] for x in sorted_bnodes] - def objectList(self, objects): - objects = self.sortObjects(objects) count = len(objects) if count == 0: return diff --git a/test/data/longturtle/longturtle-target.ttl b/test/data/longturtle/longturtle-target.ttl index 329f2ca0c..54cf23e9f 100644 --- a/test/data/longturtle/longturtle-target.ttl +++ b/test/data/longturtle/longturtle-target.ttl @@ -1,74 +1,72 @@ -PREFIX cn: -PREFIX ex: PREFIX geo: PREFIX rdf: -PREFIX sdo: +PREFIX schema: PREFIX xsd: -ex:nicholas - a sdo:Person ; - sdo:age 41 ; - sdo:alternateName - "N.J. Car" , - "Nick Car" , + + a schema:Person ; + schema:age 41 ; + schema:alternateName [ - sdo:name "Dr N.J. Car" ; - ] ; - sdo:name + schema:name "Dr N.J. Car" ; + ] , + "N.J. Car" , + "Nick Car" ; + schema:name [ - a cn:CompoundName ; - sdo:hasPart - [ - a cn:CompoundName ; - rdf:value "John" ; - ] , + a ; + schema:hasPart [ - a cn:CompoundName ; - rdf:value "Nicholas" ; - ] , - [ - a cn:CompoundName ; - sdo:hasPart + a ; + schema:hasPart [ - a cn:CompoundName ; + a ; rdf:value "Car" ; ] , [ - a cn:CompoundName ; + a ; rdf:value "Maxov" ; ] ; + ] , + [ + a ; + rdf:value "Nicholas" ; + ] , + [ + a ; + rdf:value "John" ; ] ; ] ; - sdo:worksFor ; + schema:worksFor ; . - a sdo:Organization ; - sdo:location ; + a schema:Organization ; + schema:location ; . - a sdo:Place ; - sdo:address + a schema:Place ; + schema:address [ - a sdo:PostalAddress ; - sdo:addressCountry + a schema:PostalAddress ; + schema:addressCountry [ - sdo:identifier "au" ; - sdo:name "Australia" ; + schema:identifier "au" ; + schema:name "Australia" ; ] ; - sdo:addressLocality "Shorncliffe" ; - sdo:addressRegion "QLD" ; - sdo:postalCode 4017 ; - sdo:streetAddress ( + schema:addressLocality "Shorncliffe" ; + schema:addressRegion "QLD" ; + schema:postalCode 4017 ; + schema:streetAddress ( 72 "Yundah" "Street" ) ; ] ; - sdo:geo + schema:geo [ - sdo:polygon "POLYGON((153.082403 -27.325801, 153.08241 -27.32582, 153.082943 -27.325612, 153.083010 -27.325742, 153.083543 -27.325521, 153.083456 -27.325365, 153.082403 -27.325801))"^^geo:wktLiteral ; + schema:polygon "POLYGON((153.082403 -27.325801, 153.08241 -27.32582, 153.082943 -27.325612, 153.083010 -27.325742, 153.083543 -27.325521, 153.083456 -27.325365, 153.082403 -27.325801))"^^geo:wktLiteral ; ] ; - sdo:name "KurrawongAI HQ" ; + schema:name "KurrawongAI HQ" ; . diff --git a/test/test_serializers/test_serializer_longturtle_sort.py b/test/test_serializers/test_serializer_longturtle_sort.py new file mode 100644 index 000000000..df0e38676 --- /dev/null +++ b/test/test_serializers/test_serializer_longturtle_sort.py @@ -0,0 +1,117 @@ +#!/usr/bin/env python3 + +# Portions of this file contributed by NIST are governed by the +# following statement: +# +# This software was developed at the National Institute of Standards +# and Technology by employees of the Federal Government in the course +# of their official duties. Pursuant to Title 17 Section 105 of the +# United States Code, this software is not subject to copyright +# protection within the United States. NIST assumes no responsibility +# whatsoever for its use by other parties, and makes no guarantees, +# expressed or implied, about its quality, reliability, or any other +# characteristic. +# +# We would appreciate acknowledgement if the software is used. + +import random +from collections import defaultdict + +from rdflib import RDFS, BNode, Graph, Literal, Namespace, URIRef + +EX = Namespace("http://example.org/ex/") + + +def test_sort_semiblank_graph() -> None: + """ + This test reviews whether the output of the Turtle form is + consistent when involving repeated generates with blank nodes. + """ + + serialization_counter: defaultdict[str, int] = defaultdict(int) + + first_graph_text: str = "" + + # Use a fixed sequence of once-but-no-longer random values for more + # consistent test results. + nonrandom_shuffler = random.Random(1234) + for x in range(1, 10): + graph = Graph() + graph.bind("ex", EX) + graph.bind("rdfs", RDFS) + + graph.add((EX.A, RDFS.comment, Literal("Thing A"))) + graph.add((EX.B, RDFS.comment, Literal("Thing B"))) + graph.add((EX.C, RDFS.comment, Literal("Thing C"))) + + nodes: list[URIRef] = [EX.A, EX.B, EX.C, EX.B] + nonrandom_shuffler.shuffle(nodes) + for node in nodes: + # Instantiate one bnode per URIRef node. + graph.add((BNode(), RDFS.seeAlso, node)) + + nesteds: list[URIRef] = [EX.A, EX.B, EX.C] + nonrandom_shuffler.shuffle(nesteds) + for nested in nesteds: + # Instantiate a nested node reference. + outer_node = BNode() + inner_node = BNode() + graph.add((outer_node, EX.has, inner_node)) + graph.add((inner_node, RDFS.seeAlso, nested)) + + graph_text = graph.serialize(format="longturtle", sort=True) + if first_graph_text == "": + first_graph_text = graph_text + + serialization_counter[graph_text] += 1 + + expected_serialization = """\ +PREFIX ns1: +PREFIX rdfs: + +ns1:A + rdfs:comment "Thing A" ; +. + +ns1:C + rdfs:comment "Thing C" ; +. + +ns1:B + rdfs:comment "Thing B" ; +. + +[] ns1:has + [ + rdfs:seeAlso ns1:A ; + ] ; +. + +[] rdfs:seeAlso ns1:B ; +. + +[] ns1:has + [ + rdfs:seeAlso ns1:C ; + ] ; +. + +[] rdfs:seeAlso ns1:A ; +. + +[] rdfs:seeAlso ns1:C ; +. + +[] rdfs:seeAlso ns1:B ; +. + +[] ns1:has + [ + rdfs:seeAlso ns1:B ; + ] ; +. + +""" + + assert expected_serialization.strip() == first_graph_text.strip() + assert 1 == len(serialization_counter) From bc17fb74813312f17525a2a26e46cfbb39e22db2 Mon Sep 17 00:00:00 2001 From: Val Lorentz Date: Mon, 6 Jan 2025 07:11:25 +0100 Subject: [PATCH 29/30] jsonld: Do not merge nodes with different invalid URIs (#3011) When parsing JSON-LD with invalid URIs in the `@id`, the `generalized_rdf: True` option allows parsing these nodes as blank nodes instead of outright rejecting the document. However, all nodes with invalid URIs were mapped to the same blank node, resulting in incorrect data. For example, without this patch, the new test fails with: ``` AssertionError: Expected: @prefix schema: . schema:author [ schema:familyName "Doe" ; schema:givenName "Jane" ; schema:name "Jane Doe" ], [ schema:familyName "Doe" ; schema:givenName "John" ; schema:name "John Doe" ] . Got: @prefix schema: . schema:author <> . <> schema:familyName "Doe" ; schema:givenName "Jane", "John" ; schema:name "Jane Doe", "John Doe" . ``` --- rdflib/plugins/parsers/jsonld.py | 9 ++++++++- test/jsonld/local-suite/manifest.jsonld | 11 ++++++++++ .../local-suite/toRdf-twoinvalidids-in.jsonld | 20 +++++++++++++++++++ .../local-suite/toRdf-twoinvalidids-out.nq | 10 ++++++++++ 4 files changed, 49 insertions(+), 1 deletion(-) create mode 100644 test/jsonld/local-suite/toRdf-twoinvalidids-in.jsonld create mode 100644 test/jsonld/local-suite/toRdf-twoinvalidids-out.nq diff --git a/rdflib/plugins/parsers/jsonld.py b/rdflib/plugins/parsers/jsonld.py index bc4585624..45e696adb 100644 --- a/rdflib/plugins/parsers/jsonld.py +++ b/rdflib/plugins/parsers/jsonld.py @@ -34,6 +34,7 @@ # we should consider streaming the input to deal with arbitrarily large graphs. from __future__ import annotations +import secrets import warnings from collections.abc import Iterable from typing import TYPE_CHECKING, Any, Union @@ -215,6 +216,7 @@ def __init__( if allow_lists_of_lists is not None else ALLOW_LISTS_OF_LISTS ) + self.invalid_uri_to_bnode: dict[str, BNode] = {} def parse(self, data: Any, context: Context, dataset: Graph) -> Graph: topcontext = False @@ -623,7 +625,12 @@ def _to_rdf_id(self, context: Context, id_val: str) -> IdentifiedNode | None: uri = context.resolve(id_val) if not self.generalized_rdf and ":" not in uri: return None - return URIRef(uri) + node: IdentifiedNode = URIRef(uri) + if not str(node): + if id_val not in self.invalid_uri_to_bnode: + self.invalid_uri_to_bnode[id_val] = BNode(secrets.token_urlsafe(20)) + node = self.invalid_uri_to_bnode[id_val] + return node def _get_bnodeid(self, ref: str) -> str | None: if not ref.startswith("_:"): diff --git a/test/jsonld/local-suite/manifest.jsonld b/test/jsonld/local-suite/manifest.jsonld index b32fd059a..0150b44c7 100644 --- a/test/jsonld/local-suite/manifest.jsonld +++ b/test/jsonld/local-suite/manifest.jsonld @@ -27,6 +27,17 @@ "purpose": "Multiple @id aliases. Issue #2164", "input": "toRdf-twoimports-in.jsonld", "expect": "toRdf-twoimports-out.nq" + }, + { + "@id": "#toRdf-two-invalid-ids", + "@type": ["jld:PositiveEvaluationTest", "jld:ToRDFTest"], + "name": "Two invalid identifiers", + "purpose": "Multiple nodes with invalid @ids are not merged together.", + "option": { + "produceGeneralizedRdf": true + }, + "input": "toRdf-twoinvalidids-in.jsonld", + "expect": "toRdf-twoinvalidids-out.nq" } ] } diff --git a/test/jsonld/local-suite/toRdf-twoinvalidids-in.jsonld b/test/jsonld/local-suite/toRdf-twoinvalidids-in.jsonld new file mode 100644 index 000000000..67f62927c --- /dev/null +++ b/test/jsonld/local-suite/toRdf-twoinvalidids-in.jsonld @@ -0,0 +1,20 @@ +{ + "@id": "https://example.org/root-object", + "https://schema.org/author": [ + { + "@id": "https://example.org/ invalid url 1", + "https://schema.org/name": "Jane Doe" + }, + { + "@id": "https://example.org/ invalid url 1", + "https://schema.org/givenName": "Jane", + "https://schema.org/familyName": "Doe" + }, + { + "@id": "https://example.org/ invalid url 2", + "https://schema.org/name": "John Doe", + "https://schema.org/givenName": "John", + "https://schema.org/familyName": "Doe" + } + ] +} diff --git a/test/jsonld/local-suite/toRdf-twoinvalidids-out.nq b/test/jsonld/local-suite/toRdf-twoinvalidids-out.nq new file mode 100644 index 000000000..c6550560c --- /dev/null +++ b/test/jsonld/local-suite/toRdf-twoinvalidids-out.nq @@ -0,0 +1,10 @@ + + _:b1. + _:b2. + +_:b1 "Jane Doe". +_:b1 "Jane". +_:b1 "Doe". +_:b2 "John Doe". +_:b2 "John". +_:b2 "Doe". From 6747715feb30a97bbc60a5155797cd5b50d903d2 Mon Sep 17 00:00:00 2001 From: jcbiddle <114963309+jcbiddle@users.noreply.github.com> Date: Mon, 6 Jan 2025 18:49:27 +1030 Subject: [PATCH 30/30] Fixed incorrect ASK behaviour for dataset with one element (#2989) --- rdflib/plugins/sparql/parser.py | 2 +- test/test_sparql/test_dataset_exclusive.py | 10 ++++++++++ 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/rdflib/plugins/sparql/parser.py b/rdflib/plugins/sparql/parser.py index 665800c4f..0700ac2c0 100644 --- a/rdflib/plugins/sparql/parser.py +++ b/rdflib/plugins/sparql/parser.py @@ -1483,7 +1483,7 @@ def expandCollection(terms: ParseResults) -> list[list[Any]]: AskQuery = Comp( "AskQuery", Keyword("ASK") - + Param("datasetClause", ZeroOrMore(DatasetClause)) + + ZeroOrMore(ParamList("datasetClause", DatasetClause)) + WhereClause + SolutionModifier + ValuesClause, diff --git a/test/test_sparql/test_dataset_exclusive.py b/test/test_sparql/test_dataset_exclusive.py index 2ce23d52b..d867623c2 100644 --- a/test/test_sparql/test_dataset_exclusive.py +++ b/test/test_sparql/test_dataset_exclusive.py @@ -82,3 +82,13 @@ def test_from_and_from_named(): (None, URIRef("urn:s1"), URIRef("urn:p1"), URIRef("urn:o1")), (URIRef("urn:g2"), URIRef("urn:s2"), URIRef("urn:p2"), URIRef("urn:o2")), ] + + +def test_ask_from(): + query = """ + ASK + FROM + WHERE {?s ?p ?o} + """ + results = bool(dataset.query(query)) + assert results