-
Notifications
You must be signed in to change notification settings - Fork 14
/
setup.cfg
103 lines (96 loc) · 2.2 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
[metadata]
name = pymodulon
version = attr: pymodulon.__version__
url = https://github.com/SBRG/pymodulon
download_url = https://pypi.org/project/pymodulon/
project_urls =
Source = https://github.com/SBRG/pymodulon
Tracker = https://github.com/SBRG/pymodulon/issues/
author = Anand V. Sastry
author_email = [email protected]
maintainer = Anand V. Sastry
maintainer_email = [email protected]
classifiers =
Development Status :: 3 - Alpha
Environment :: Console
Intended Audience :: Science/Research
License :: OSI Approved :: MIT License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3 :: Only
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
license = MIT
license_file = LICENSE
description = Python package for analyzing and visualizing iModulons.
long_description = file: README.rst
long_description_content_type = text/x-rst
keywords =
python
iModulon
RNA-seq
transcriptomics
ICA
regulation
platforms =
GNU/Linux
Mac OS X > 10.7
Microsoft Windows >= 7
[options]
zip_safe = False
install_requires =
adjusttext >= 0.7
beautifulsoup4 >= 4.9
biopython
graphviz
jupyter >= 1.0
lxml
matplotlib >= 3.2
matplotlib_venn >= 0.11
numpy >= 1.19
openpyxl >= 2.5
pandas >= 1.0
scikit-learn >= 0.23
scipy >= 1.5
seaborn >= 0.10
statsmodels >= 0.9
tqdm >= 4.47
include_package_data = True
packages = find:
package_dir =
= src
[options.packages.find]
where = src
include =
pymodulon
[options.package_data]
* = data/*
[options.extras_require]
dev =
bumpversion
pre-commit
tox
docs =
sphinx == 3.5.4
sphinx-autoapi == 1.9.0
sphinx_rtd_theme == 1.3.0
sphinxcontrib-bibtex == 2.6.2
nbsphinx == 0.9.3
jinja2 == 2.11.3
markupsafe == 1.1.1
docutils == 0.16
tests =
pytest
pytest-cov
coverage[toml]
all =
%(dev)s
%(docs)s
[flake8]
ignore = E203, E266, E501, W503, F401, C901
max-line-length = 88
max-complexity = 18
exclude_types = ["ipynb"]