Merge pull request #1390 from danny-lloyd/improve-docs-datatype-table #931
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name: Build and Test | |
on: | |
pull_request: | |
push: | |
branches: [master] | |
jobs: | |
run-serial: | |
runs-on: ${{ matrix.os }} | |
#env: | |
# NO_NET: 1 | |
strategy: | |
matrix: | |
python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ] | |
os: [windows-latest, ubuntu-latest, macos-latest] | |
platform: [x64, x32] | |
exclude: | |
- os: macos-latest | |
platform: x32 | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: true | |
- name: Setup Micromamba | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
environment-name: TEST | |
init-shell: bash | |
create-args: >- | |
python=${{ matrix.python-version }} | |
numpy cython pip setuptools pytest hdf5 libnetcdf cftime zlib certifi typing-extensions | |
--channel conda-forge | |
- name: Install netcdf4-python | |
run: | | |
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
python -m pip install -v -e . --no-deps --no-build-isolation --force-reinstall | |
- name: Tests | |
run: | | |
pytest -s -rxs -v test | |
run-mpi: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: [ "3.12" ] | |
os: [ubuntu-latest] | |
platform: [x64] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: true | |
- name: Setup Micromamba | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
environment-name: TEST | |
init-shell: bash | |
create-args: >- | |
python=${{ matrix.python-version }} | |
numpy cython pip pytest openmpi mpi4py hdf5=*=mpi* libnetcdf=*=mpi* cftime zlib certifi typing-extensions | |
--channel conda-forge | |
- name: Install netcdf4-python with mpi | |
run: | | |
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
nc-config --all | |
python -m pip install -v -e . --no-build-isolation --no-deps --force-reinstall | |
- name: Tests | |
run: | | |
cd test && python run_all.py | |
cd ../examples | |
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" | |
which mpirun | |
mpirun --version | |
mpirun -np 4 --oversubscribe python mpi_example.py # for openmpi | |
#mpirun -np 4 python mpi_example.py | |
if [ $? -ne 0 ] ; then | |
echo "hdf5 mpi test failed!" | |
exit 1 | |
else | |
echo "hdf5 mpi test passed!" | |
fi |