Bump actions/checkout from 3 to 4 #244
Workflow file for this run
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name: Build and Test Linux with latest netcdf-c | |
on: [push, pull_request] | |
jobs: | |
build-linux: | |
name: Python (${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
env: | |
PNETCDF_VERSION: 1.12.1 | |
NETCDF_VERSION: 4.9.2 | |
NETCDF_DIR: ${{ github.workspace }}/.. | |
NETCDF_EXTRA_CONFIG: --enable-pnetcdf | |
CC: mpicc.mpich | |
#NO_NET: 1 | |
strategy: | |
matrix: | |
python-version: ["3.11"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Ubuntu Dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev libcurl4-openssl-dev bzip2 libsnappy-dev libblosc-dev libzstd-dev | |
echo "Download and build PnetCDF version ${PNETCDF_VERSION}" | |
wget https://parallel-netcdf.github.io/Release/pnetcdf-${PNETCDF_VERSION}.tar.gz | |
tar -xzf pnetcdf-${PNETCDF_VERSION}.tar.gz | |
pushd pnetcdf-${PNETCDF_VERSION} | |
./configure --prefix $NETCDF_DIR --enable-shared --disable-fortran --disable-cxx | |
make -j 2 | |
make install | |
popd | |
echo "Download and build netCDF version ${NETCDF_VERSION}" | |
wget https://downloads.unidata.ucar.edu/netcdf-c/${NETCDF_VERSION}/netcdf-c-${NETCDF_VERSION}.tar.gz | |
tar -xzf netcdf-c-${NETCDF_VERSION}.tar.gz | |
pushd netcdf-c-${NETCDF_VERSION} | |
export CPPFLAGS="-I/usr/include/hdf5/mpich -I${NETCDF_DIR}/include" | |
export LDFLAGS="-L${NETCDF_DIR}/lib" | |
export LIBS="-lhdf5_mpich_hl -lhdf5_mpich -lm -lz" | |
./configure --prefix $NETCDF_DIR --enable-netcdf-4 --enable-shared --enable-dap --enable-parallel4 $NETCDF_EXTRA_CONFIG | |
make -j 2 | |
make install | |
popd | |
# - name: The job has failed | |
# if: ${{ failure() }} | |
# run: | | |
# cd netcdf-c-${NETCDF_VERSION} | |
# cat config.log | |
- name: Install python dependencies via pip | |
run: | | |
python -m pip install --upgrade pip | |
pip install numpy cython cftime pytest twine wheel check-manifest mpi4py | |
- name: Install netcdf4-python | |
run: | | |
export PATH=${NETCDF_DIR}/bin:${PATH} | |
export NETCDF_PLUGIN_DIR=${{ github.workspace }}/netcdf-c-${NETCDF_VERSION}/plugins/plugindir | |
python setup.py install | |
- name: Test | |
run: | | |
export PATH=${NETCDF_DIR}/bin:${PATH} | |
python checkversion.py | |
# serial | |
cd test | |
python run_all.py | |
# parallel (hdf5 for netcdf4, pnetcdf for netcdf3) | |
cd ../examples | |
mpirun.mpich -np 4 python mpi_example.py | |
if [ $? -ne 0 ] ; then | |
echo "hdf5 mpi test failed!" | |
exit 1 | |
else | |
echo "hdf5 mpi test passed!" | |
fi | |
mpirun.mpich -np 4 python mpi_example_compressed.py | |
if [ $? -ne 0 ] ; then | |
echo "hdf5 compressed mpi test failed!" | |
exit 1 | |
else | |
echo "hdf5 compressed mpi test passed!" | |
fi | |
mpirun.mpich -np 4 python mpi_example.py NETCDF3_64BIT_DATA | |
if [ $? -ne 0 ] ; then | |
echo "pnetcdf mpi test failed!" | |
exit 1 | |
else | |
echo "pnetcdf mpi test passed!" | |
fi | |
# - name: Tarball | |
# run: | | |
# export PATH=${NETCDF_DIR}/bin:${PATH} | |
# python setup.py --version | |
# check-manifest --version | |
# check-manifest --verbose | |
# pip wheel . -w dist --no-deps | |
# twine check dist/* |