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Fix error related to Appium when installing dependencies in NPM version 7.5.2 #28849

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@fluiddot fluiddot commented Feb 8, 2021

Addresses #28834

Description

Running npm install with NPM version 7.5.2 produces the following error:

npm ERR! code ENOENT
npm ERR! syscall chmod
npm ERR! path <WORKSPACE_DIR>/gutenberg/node_modules/appium/node_modules/.bin/authorize-ios
npm ERR! errno -2
npm ERR! enoent ENOENT: no such file or directory, chmod '<WORKSPACE_DIR>/gutenberg/node_modules/appium/node_modules/.bin/authorize-ios'
npm ERR! enoent This is related to npm not being able to find a file.
npm ERR! enoent

npm ERR! A complete log of this run can be found in:
npm ERR!     <HOME_DIR>/.npm/_logs/2021-02-08T11_26_48_383Z-debug.log

How has this been tested?

  1. Install latest NPM version 7.5.2 (with NVM: nvm install --latest-npm)
  2. Run npm install

Screenshots

N/A

Types of changes

Bug fix

Checklist:

  • My code is tested.
  • My code follows the WordPress code style.
  • My code follows the accessibility standards.
  • My code has proper inline documentation.
  • I've included developer documentation if appropriate.
  • I've updated all React Native files affected by any refactorings/renamings in this PR.

@fluiddot fluiddot added [Type] Bug An existing feature does not function as intended [Type] Build Tooling Issues or PRs related to build tooling labels Feb 8, 2021
@fluiddot fluiddot self-assigned this Feb 8, 2021
@fluiddot fluiddot changed the title Fix error when installing dependencies in NPM version 7.5.2 Fix error related to Appium when installing dependencies in NPM version 7.5.2 Feb 8, 2021
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Size Change: 0 B

Total Size: 1.36 MB

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@fluiddot fluiddot mentioned this pull request Feb 8, 2021
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@ockham
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ockham commented Feb 8, 2021

I've merged #28824, will rebase this PR now.

@ockham
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ockham commented Feb 8, 2021

BTW @fluiddot, I'm not really seeing any errors/warnings about the git+ssh protocol issues that you mentioned in #28824 (comment) 🤔

Instead, I'm still getting the other error (about chmod 'gutenberg/node_modules/appium/build/lib/main.js'):

npm ERR! code ENOENT
npm ERR! syscall chmod
npm ERR! path gutenberg/node_modules/appium/build/lib/main.js
npm ERR! errno -2
npm ERR! enoent ENOENT: no such file or directory, chmod 'gutenberg/node_modules/appium/build/lib/main.js'
npm ERR! enoent This is related to npm not being able to find a file.
npm ERR! enoent 

@fluiddot
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fluiddot commented Feb 8, 2021

BTW @fluiddot, I'm not really seeing any errors/warnings about the git+ssh protocol issues that you mentioned in #28824 (comment) 🤔

Instead, I'm still getting the other error (about chmod 'gutenberg/node_modules/appium/build/lib/main.js'):

npm ERR! code ENOENT
npm ERR! syscall chmod
npm ERR! path gutenberg/node_modules/appium/build/lib/main.js
npm ERR! errno -2
npm ERR! enoent ENOENT: no such file or directory, chmod 'gutenberg/node_modules/appium/build/lib/main.js'
npm ERR! enoent This is related to npm not being able to find a file.
npm ERR! enoent 

Yeah I had that too, I'm not sure what's causing it, the only way I got it fixed was by running npm install with npm@6 and then switch to npm@7. After that even removing the node_modules folder and installing all dependencies again worked.

I though that it could be related to the new package-lock format, are you having this error with the changes from this branch?

@fluiddot
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fluiddot commented Feb 8, 2021

Regarding the errors with git+ssh, this is only happening on CI jobs (an example), I think it can't be reproduced locally.

There's an opened issue on npm/cli repository about this.

@fluiddot
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fluiddot commented Feb 8, 2021

I checked in the NPM 7 release post that now npm install will always resolve dependencies with git+ssh:

From "Changes in npm v7":

Git dependencies on known git hosts (GitHub, BitBucket, etc.) will always attempt to fetch package contents from the relevant tarball CDNs if possible, falling back to git+ssh for private packages. resolved value in package-lock.json will always reflect the git+ssh url value. Saved value in package.json dependencies will always reflect the canonical shorthand value.

Unless we find a workaround for this, one option would be to update the CI workflows so they have access by SSH to the forks.

@ockham
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ockham commented Feb 8, 2021

I checked in the NPM 7 release post that now npm install will always resolve dependencies with git+ssh:

From "Changes in npm v7":

Git dependencies on known git hosts (GitHub, BitBucket, etc.) will always attempt to fetch package contents from the relevant tarball CDNs if possible, falling back to git+ssh for private packages. resolved value in package-lock.json will always reflect the git+ssh url value. Saved value in package.json dependencies will always reflect the canonical shorthand value.

Unless we find a workaround for this, one option would be to update the CI workflows so they have access by SSH to the forks.

Hmm, still sounds like a bug to me. I mean npm is now part of GitHub, certainly they should make sure that an npm upgrade won't break GitHub Actions workflows that attempt to fetch npm dependencies from GitHub? 🤔

@ockham
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ockham commented Feb 8, 2021

BTW @fluiddot, I'm not really seeing any errors/warnings about the git+ssh protocol issues that you mentioned in #28824 (comment) thinking
Instead, I'm still getting the other error (about chmod 'gutenberg/node_modules/appium/build/lib/main.js'):

npm ERR! code ENOENT
npm ERR! syscall chmod
npm ERR! path gutenberg/node_modules/appium/build/lib/main.js
npm ERR! errno -2
npm ERR! enoent ENOENT: no such file or directory, chmod 'gutenberg/node_modules/appium/build/lib/main.js'
npm ERR! enoent This is related to npm not being able to find a file.
npm ERR! enoent 

Yeah I had that too, I'm not sure what's causing it, the only way I got it fixed was by running npm install with npm@6 and then switch to npm@7. After that even removing the node_modules folder and installing all dependencies again worked.

I though that it could be related to the new package-lock format, are you having this error with the changes from this branch?

Ah! Seems like I don't! I removed my node_modules (and packages/*/node_modules), checked out this branch, enabled node 14 + npm 7, and was able to run npm i 🎉

I'm getting a package-lock.json diff from that tho -- with the git+https -> git+ssh changes 😬

diff --git a/package-lock.json b/package-lock.json
index 1fb46604ba..379e505aaf 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -72915,11 +72915,11 @@
 			"integrity": "sha512-ng6Tm537E/M42GjE4TRUxQyL8sRfClcL7bQWblOCoxPZzJ2J3bdALsjeG3vDnVCIfI/R0AeFalN9KjMt0+Z/Zg=="
 		},
 		"@react-native-community/masked-view": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-masked-view.git#f65a51a3320e58404d7f38d967bfd1f42b439ca9",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-masked-view.git#f65a51a3320e58404d7f38d967bfd1f42b439ca9",
 			"from": "@react-native-community/masked-view@git+https://github.com/wordpress-mobile/react-native-masked-view.git#f65a51a3320e58404d7f38d967bfd1f42b439ca9"
 		},
 		"@react-native-community/slider": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-slider.git#d263ff16cdd9fb7352b354342522ff030f220f42",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-slider.git#d263ff16cdd9fb7352b354342522ff030f220f42",
 			"from": "@react-native-community/slider@git+https://github.com/wordpress-mobile/react-native-slider.git#d263ff16cdd9fb7352b354342522ff030f220f42"
 		},
 		"@react-navigation/core": {
@@ -103911,7 +103911,7 @@
 			}
 		},
 		"jsdom-jscore-rn": {
-			"version": "git+https://[email protected]/iamcco/jsdom-jscore-rn.git#a562f3d57c27c13e5bfc8cf82d496e69a3ba2800",
+			"version": "git+ssh://[email protected]/iamcco/jsdom-jscore-rn.git#a562f3d57c27c13e5bfc8cf82d496e69a3ba2800",
 			"from": "jsdom-jscore-rn@git+https://github.com/iamcco/jsdom-jscore-rn.git#a562f3d57c27c13e5bfc8cf82d496e69a3ba2800",
 			"requires": {
 				"htmlparser2-without-node-native": "^3.9.2",
@@ -113333,7 +113333,7 @@
 			}
 		},
 		"react-native-dark-mode": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-dark-mode.git#f09bf1480e7b34536413ab3300f29e4375edb2c6",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-dark-mode.git#f09bf1480e7b34536413ab3300f29e4375edb2c6",
 			"from": "react-native-dark-mode@git+https://github.com/wordpress-mobile/react-native-dark-mode.git#f09bf1480e7b34536413ab3300f29e4375edb2c6",
 			"requires": {
 				"@types/events": "^3.0.0",
@@ -113351,7 +113351,7 @@
 			}
 		},
 		"react-native-gesture-handler": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-gesture-handler.git#b80e959908b383a26d6e35d992d6d529efad0b16",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-gesture-handler.git#b80e959908b383a26d6e35d992d6d529efad0b16",
 			"from": "react-native-gesture-handler@git+https://github.com/wordpress-mobile/react-native-gesture-handler.git#b80e959908b383a26d6e35d992d6d529efad0b16",
 			"requires": {
 				"@egjs/hammerjs": "^2.0.17",
@@ -113361,14 +113361,14 @@
 			}
 		},
 		"react-native-get-random-values": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-get-random-values.git#f03f2c16414aff4ea76064dcd00a9e3c6efc838d",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-get-random-values.git#f03f2c16414aff4ea76064dcd00a9e3c6efc838d",
 			"from": "react-native-get-random-values@git+https://github.com/wordpress-mobile/react-native-get-random-values.git#f03f2c16414aff4ea76064dcd00a9e3c6efc838d",
 			"requires": {
 				"fast-base64-decode": "^1.0.0"
 			}
 		},
 		"react-native-hr": {
-			"version": "git+https://[email protected]/Riglerr/react-native-hr.git#2d01a5cf77212d100e8b99e0310cce5234f977b3",
+			"version": "git+ssh://[email protected]/Riglerr/react-native-hr.git#2d01a5cf77212d100e8b99e0310cce5234f977b3",
 			"from": "react-native-hr@git+https://github.com/Riglerr/react-native-hr.git#2d01a5cf77212d100e8b99e0310cce5234f977b3"
 		},
 		"react-native-hsv-color-picker": {
@@ -113385,7 +113385,7 @@
 			"integrity": "sha512-+/bcZWFeZt0xSS/+3CHM5K7qPL4vDO/3ARLIowzFpUPGZiPsv9+NET+XNqqseRYwFJwYMmtX+Q4TZKxAVy09ew=="
 		},
 		"react-native-keyboard-aware-scroll-view": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-keyboard-aware-scroll-view.git#678a4d459caa2f7f448202574dddc6a19954500c",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-keyboard-aware-scroll-view.git#678a4d459caa2f7f448202574dddc6a19954500c",
 			"from": "react-native-keyboard-aware-scroll-view@git+https://github.com/wordpress-mobile/react-native-keyboard-aware-scroll-view.git#gb-v0.8.8",
 			"requires": {
 				"prop-types": "^15.6.2",
@@ -113393,7 +113393,7 @@
 			}
 		},
 		"react-native-linear-gradient": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-linear-gradient.git#52bf43077171cff8714ce3e0155f3ebb7f55bc37",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-linear-gradient.git#52bf43077171cff8714ce3e0155f3ebb7f55bc37",
 			"from": "react-native-linear-gradient@git+https://github.com/wordpress-mobile/react-native-linear-gradient.git#52bf43077171cff8714ce3e0155f3ebb7f55bc37"
 		},
 		"react-native-modal": {
@@ -113406,7 +113406,7 @@
 			}
 		},
 		"react-native-reanimated": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-reanimated.git#ed48f510fba751cd75da7629e92276166766be91",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-reanimated.git#ed48f510fba751cd75da7629e92276166766be91",
 			"from": "react-native-reanimated@git+https://github.com/wordpress-mobile/react-native-reanimated.git#ed48f510fba751cd75da7629e92276166766be91",
 			"requires": {
 				"fbjs": "^1.0.0"
@@ -113443,7 +113443,7 @@
 			}
 		},
 		"react-native-safe-area-context": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-safe-area-context.git#1e3c0d34f31b59fb79f71ec0b4c39c513f684871",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-safe-area-context.git#1e3c0d34f31b59fb79f71ec0b4c39c513f684871",
 			"from": "react-native-safe-area-context@git+https://github.com/wordpress-mobile/react-native-safe-area-context.git#1e3c0d34f31b59fb79f71ec0b4c39c513f684871"
 		},
 		"react-native-sass-transformer": {
@@ -113464,11 +113464,11 @@
 			}
 		},
 		"react-native-screens": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-screens.git#b3d907bda2695743f35fd874261dcd27e0912eca",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-screens.git#b3d907bda2695743f35fd874261dcd27e0912eca",
 			"from": "react-native-screens@git+https://github.com/wordpress-mobile/react-native-screens.git#b3d907bda2695743f35fd874261dcd27e0912eca"
 		},
 		"react-native-svg": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-svg.git#a628e92990a2404e30a0086f168bd2b5b7b4ce96",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-svg.git#a628e92990a2404e30a0086f168bd2b5b7b4ce96",
 			"from": "react-native-svg@git+https://github.com/wordpress-mobile/react-native-svg.git#a628e92990a2404e30a0086f168bd2b5b7b4ce96",
 			"requires": {
 				"css-select": "^2.0.2",
@@ -113550,7 +113550,7 @@
 			}
 		},
 		"react-native-video": {
-			"version": "git+https://[email protected]/wordpress-mobile/react-native-video.git#1b964b107863351ed744fc104d7952bbec3e2d4f",
+			"version": "git+ssh://[email protected]/wordpress-mobile/react-native-video.git#1b964b107863351ed744fc104d7952bbec3e2d4f",
 			"from": "react-native-video@git+https://github.com/wordpress-mobile/react-native-video.git#1b964b107863351ed744fc104d7952bbec3e2d4f",
 			"requires": {
 				"prop-types": "^15.5.10"

@ockham
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ockham commented Feb 8, 2021

We might try setting persist-credentials to false for our checkout actions, see https://stackoverflow.com/a/62124409 🤔

@ockham
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ockham commented Feb 8, 2021

We might try setting persist-credentials to false for our checkout actions, see https://stackoverflow.com/a/62124409

Trying in ceee13c for the unit test workflow 🤞

@fluiddot
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fluiddot commented Feb 8, 2021

We might try setting persist-credentials to false for our checkout actions, see https://stackoverflow.com/a/62124409

Trying in ceee13c for the unit test workflow 🤞

I'm afraid it still fails 😭 .

I was checking the documentation from actions/checkout and I think persist-credential should be true if we want to use the SSH key generated to fetch other repositories.

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ockham commented Feb 8, 2021

I'm afraid it still fails 😭 .

Yeah, I saw that 😕

I was checking the documentation from actions/checkout and I think persist-credential should be true if we want to use the SSH key generated to fetch other repositories.

That's the default setting I think (so that's what we've been implicitly trying prior to my change).
I actually did mean to not use the SSH key, since those other repos are public, so they should be available without a key. That was my line of thinking at least -- we've now seen that that doesn't work either.

@fluiddot
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fluiddot commented Feb 9, 2021

That's the default setting I think (so that's what we've been implicitly trying prior to my change).

Right, I forced the value just in case but we should remove it since it's the default one.

I actually did mean to not use the SSH key, since those other repos are public, so they should be available without a key. That was my line of thinking at least -- we've now seen that that doesn't work either.

Yeah but even for public repos I think you need a SSH key if you checkout via SSH, I think that's the cause for the forked repos to fail in the CI.

In previous projects what I did was to have a GitHub user (like a Bot) with minimum permissions and add the SSH key as a secret to be used in the workflow. In that case it was required for private repos, I'm surprised that it could be required also for public ones 🤔 .

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fluiddot commented Feb 9, 2021

I've created an example repository for reproducing the problem with CI in an empty project.

The created repository is named github-actions-test and only contains a package.json file that includes React, React native and one of dependencies that are causing CI to fail (@react-native-community/masked-view).

I created a PR that includes a simple workflow for testing NPM install. Unfortunately the jobs are failing with exactly the same error:

npm ERR! Error while executing:
npm ERR! /usr/bin/git ls-remote -h -t ssh://[email protected]/wordpress-mobile/react-native-masked-view.git
npm ERR! 
npm ERR! Warning: Permanently added the RSA host key for IP address '140.82.114.3' to the list of known hosts.
npm ERR! [email protected]: Permission denied (publickey).
npm ERR! fatal: Could not read from remote repository.
npm ERR! 
npm ERR! Please make sure you have the correct access rights
npm ERR! and the repository exists.
npm ERR! 
npm ERR! exited with error code: 128

Looks like that GitHub actions can't checkout repositories via SSH unless we explicitly add an SSH key for it. I found an issue related to this in actions/setup-node.

I'm thinking about different solutions for this but all of them would imply to change the way we reference them, instead of using commit hash we should use versions and therefore create releases for each one. This way we could reference the tarball URL from the release or publish it to NPM.

Example of tarball URL:

"@react-native-community/masked-view": "https://github.com/wordpress-mobile/react-native-masked-view/archive/v0.1.10-wp.tar.gz",

@fluiddot
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fluiddot commented Feb 9, 2021

By the time I was testing I spotted that there's a new version of NPM 7.5.3 that fixes the problem of changing git+https urls to git+ssh 🎊.

@ockham
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ockham commented Feb 9, 2021

By the time I was testing I spotted that there's a new version of NPM 7.5.3 that fixes the problem of changing git+https urls to git+ssh .

Yesss! That's great to hear!

(And TBH, from your description of the underlying issue and potential workarounds, this is the only solution that makes sense IMO -- People can't be assumed to suddenly add GitHub bots with minimum permissions just to be able to install npm dependencies because of an npm bug 😅 )

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ockham commented Feb 9, 2021

Anyway, I'll:

  • Revert the unit test workflow changes.
  • Try this again locally (with npm 7.5.3).
  • If it works, I'll also revert the git+https -> git+ssh changes in the package lock, and will push those.
  • If all goes well, the PR should then go green 🤞

@fluiddot
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fluiddot commented Feb 9, 2021

By the time I was testing I spotted that there's a new version of NPM 7.5.3 that fixes the problem of changing git+https urls to git+ssh .

Yesss! That's great to hear!

(And TBH, from your description of the underlying issue and potential workarounds, this is the only solution that makes sense IMO -- People can't be assumed to suddenly add GitHub bots with minimum permissions just to be able to install npm dependencies because of an npm bug 😅 )

Yeah it didn't make sense for public repos. Now the problem I'm facing is that running npm install doesn't change the URL format from git+ssh to git+https if it's already included in the package-lock.json file. So I need to uninstall and install again those dependencies to leave the correct URL format 😅 .

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ockham commented Feb 9, 2021

  • If it works, I'll also revert the git+https -> git+ssh changes in the package lock, and will push those.

Ah I see you've already done that in ae4ee0c 🎉

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ockham commented Feb 9, 2021

Yeah it didn't make sense for public repos.

👍

Now the problem I'm facing is that running npm install doesn't change the URL format from git+ssh to git+https if it's already included in the package-lock.json file. So I need to uninstall and install again those dependencies to leave the correct URL format .

Hmm, maybe it'd be easier to start from a clean slate (i.e. fresh branch) in that case?

@fluiddot
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fluiddot commented Feb 9, 2021

Yeah it didn't make sense for public repos.

👍

Now the problem I'm facing is that running npm install doesn't change the URL format from git+ssh to git+https if it's already included in the package-lock.json file. So I need to uninstall and install again those dependencies to leave the correct URL format .

Hmm, maybe it'd be easier to start from a clean slate (i.e. fresh branch) in that case?

Yep, I'm thinking to rebase this branch and start from scratch.

@ockham
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ockham commented Feb 9, 2021

Yep, I'm thinking to rebase this branch and start from scratch.

Not sure it's worth rebasing? Looking at the PR, there are basically only two changes we'd like to keep:

  • The appium upgrade (which we need for npm 7 to work with this repo), and
  • The npm 7 specific changes to package-lock.json (are there any? 😬 )

We might be able to file a new PR with the appium upgrade only (performed using npm 6). This should then unblock the npm 7 upgrade, which we could even do in a separate PR 🤔

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fluiddot commented Feb 9, 2021

Not sure it's worth rebasing? Looking at the PR, there are basically only two changes we'd like to keep:

  • The appium upgrade (which we need for npm 7 to work with this repo), and
  • The npm 7 specific changes to package-lock.json (are there any? 😬 )

Yeah the reference for the dependencies with format git+https need to be updated to prevent NPM to change them to git+ssh.

We might be able to file a new PR with the appium upgrade only (performed using npm 6). This should then unblock the npm 7 upgrade, which we could even do in a separate PR 🤔

Yeah, makes sense to make it in two separate PRs, one for updating the package-lock.json file to version 2 and another one for the appium upgrade.

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fluiddot commented Feb 9, 2021

I'm closing this PR because this issue will be addressed with the following PRs:

This is the status of this fix so far:

CI failures due to not having access to some repositories

This has been fixed in NPM version 7.5.3 and by updating the references of the forked dependencies from react-native-editor package.

Dependencies install error

The original error related to #28834 has been fixed by upgrading appium dependency, however a new error is now thrown quite similar but referencing a new file:

npm ERR! code ENOENT
npm ERR! syscall chmod
npm ERR! path /home/runner/work/gutenberg/gutenberg/node_modules/appium/build/lib/main.js
npm ERR! errno -2
npm ERR! enoent ENOENT: no such file or directory, chmod '/home/runner/work/gutenberg/gutenberg/node_modules/appium/build/lib/main.js'
npm ERR! enoent This is related to npm not being able to find a file.
npm ERR! enoent 

I've created an issue in Appium repository just in case they can fix it, although this issue is already reported in npm/cli.

@fluiddot fluiddot closed this Feb 9, 2021
@fluiddot fluiddot deleted the fix/npm-7-appium branch February 9, 2021 17:57
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