-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathdatasets_find_9283.ini
158 lines (135 loc) · 3.38 KB
/
datasets_find_9283.ini
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
; Global parameters (prepared by Nik Mihaylov)
; The directory relative to which the directory with the original images (datadir) is specified
databasedir = Z:\Dropbox\cornell\Dropbox\Alex\CTC\CoverSlip
; The directory relative to which the manual coordinates file (coordinates) is specified
xlsbasedir = Z:\tmp
; The direcotry relative to which the result directory (resdir) is specified
resbasedir = Z:\public_html\coverslip\ctc_coverslip_results_20131029_3
; The directory where to cache the segmented images
segdir = C:\Temp\ctc_seg
; The pictures used as labels for images 512 pixels wide
labelCK_512 = label_PSMA.png
labelDAPI_512 = label_DAPI.png
labelCD45_512 = label_CD45.png
; The pictures used as labels for images 1024 pixels wide
labelCK_1024 = label_PSMA_1024.png
labelDAPI_1024 = label_DAPI_1024.png
labelCD45_1024 = label_CD45_1024.png
[9283-0913-05 Flash 2x2]
datadir = 9283\9283-0913Ficoll05flash2x2-10x1014
coordinates = ManCoords_9283-0913_Ficoll_05_flash_2x2.xls
nameCK = 9283-0913Ficoll05flash2x2-1014m%02d_ORG_c1.tif
nameDAPI = 9283-0913Ficoll05flash2x2-1014m%02d_ORG_c2.tif
nameCD45 = 9283-0913Ficoll05flash2x2-1014m%02d_ORG_c3.tif
positions = 49
coefCD45 = 1.45
maxDist = 9
rectSize = 31
minCK = 0
maxCK = 4000
minDAPI = 0
maxDAPI = 8000
minCD45 = 0
maxCD45 = 3000
maxCD45pixels = 2
minDAPIarea = 23
maxDAPIarea = 82
minDAPImean = 12367
maxDAPImean = 23630
minDAPItotal = 482570
maxDAPItotal = 11488167
minDAPImin = 6393
maxDAPImin = 15003
minDAPImax = 16685
maxDAPImax = 36129
minDAPIecc = 1.4
minCKarea = 27
maxCKarea = 90
minCKmean = 1205
maxCKmean = 7356
minCKtotal = 86570
maxCKtotal = 600133
minCKmin = 690
maxCKmin = 5423
minCKmax = 1757
maxCKmax = 10398
minCKecc = 1.2
[9283-0913-06 Flash 2x2]
datadir = 9283\9283-0913Ficoll06flash2x2-10x1014
coordinates = ManCoords_9283-0913-06.xls
nameCK = 9283-0913Ficoll06flash2x2-1014m%02d_ORG_c1.tif
nameDAPI = 9283-0913Ficoll06flash2x2-1014m%02d_ORG_c2.tif
nameCD45 = 9283-0913Ficoll06flash2x2-1014m%02d_ORG_c3.tif
positions = 49
coefCD45 = 1.45
maxDist = 9
rectSize = 31
minCK = 0
maxCK = 4000
minDAPI = 0
maxDAPI = 8000
minCD45 = 0
maxCD45 = 3000
maxCD45pixels = 2
minDAPIarea = 31
maxDAPIarea = 61
minDAPImean = 11390
maxDAPImean = 16836
minDAPItotal = 477528
maxDAPItotal = 1026952
minDAPImin = 6476
maxDAPImin = 10715
minDAPImax = 15253
maxDAPImax = 24101
minDAPIecc = 1.1
minCKarea = 43
maxCKarea = 83
minCKmean = 2008
maxCKmean = 5283
minCKtotal = 145617
maxCKtotal = 306396
minCKmin = 1300
maxCKmin = 3369
minCKmax = 2793
maxCKmax = 7145
minCKecc = 1.095
[9283-0913-08 Flash 2x2]
datadir = 9283\9283-0913Ficoll08-1014org
coordinates = ManCoords_9283-0913-08.xls
nameCK = 9283-0913Ficoll08flash2x2-1014m%02d_ORG_c1.tif
nameDAPI = 9283-0913Ficoll08flash2x2-1014m%02d_ORG_c2.tif
nameCD45 = 9283-0913Ficoll08flash2x2-1014m%02d_ORG_c3.tif
positions = 49
coefCD45 = 1.45
maxDist = 9
rectSize = 31
minCK = 0
maxCK = 4000
minDAPI = 0
maxDAPI = 8000
minCD45 = 0
maxCD45 = 3000
maxCD45pixels = 2
minDAPIarea = 30
maxDAPIarea = 51
minDAPImean = 10344
maxDAPImean = 22307
minDAPItotal = 422155
maxDAPItotal = 870193
minDAPImin = 6608
maxDAPImin = 16455
minDAPImax = 13734
maxDAPImax = 27767
minDAPIecc = 1.29
minCKarea = 7
maxCKarea = 82
minCKmean = 1826
maxCKmean = 7047
minCKtotal = 14748
maxCKtotal = 422811
minCKmin = 1054
maxCKmin = 4498
minCKmax = 2328
maxCKmax = 8828
minCKecc = 1.2