update.yml

name: Update Data
on:
  workflow_dispatch:
  schedule:
    - cron: "0 0 * * SAT"
jobs:
  build:
    runs-on: ubuntu-latest
    if: ${{ github.event_name != 'schedule' || github.repository == 'biopragmatics/bioregistry' }}
    steps:
      - uses: actions/checkout@master
        with:
          persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
          fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
      - uses: actions/setup-python@v2
        with:
          python-version: "3.12"
      - name: Install dependencies
        run: |
          pip install tox tox-uv

      ############
      #  UPDATE  #
      ############
      - name: Create local changes
        id: update
        run: |
          tox -e update
        env:
          BIOPORTAL_API_KEY: ${{ secrets.BIOPORTAL_API_KEY }}
          ECOPORTAL_API_KEY: ${{ secrets.ECOPORTAL_API_KEY }}
          AGROPORTAL_API_KEY: ${{ secrets.AGROPORTAL_API_KEY }}
          FAIRSHARING_LOGIN: ${{ secrets.FAIRSHARING_LOGIN }}
          FAIRSHARING_PASSWORD: ${{ secrets.FAIRSHARING_PASSWORD }}
          NDEX_USERNAME: ${{ secrets.NDEX_USERNAME }}
          NDEX_PASSWORD: ${{ secrets.NDEX_PASSWORD }}
      - name: Check environment
        run: echo ${{ steps.update.outputs.BR_UPDATED }}
      - name: Commit files
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          git config --local user.email "action@github.com"
          git config --local user.name "GitHub Action"
          git commit --all -m "📮 Automatically update"
      # Not sure if this should be here or not - what if it pushes something bad that needs to be reverted?
      # - name: Push changes
      #   if: steps.update.outputs.BR_UPDATED == 'true'
      #   uses: ad-m/github-push-action@master
      #   with:
      #     github_token: ${{ secrets.GITHUB_TOKEN }}
      #     branch: ${{ github.ref }}
      #     tags: true
      - name: Run tests, don't push to PyPI unless passing
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          tox -e py

      ##################
      #  MARK RELEASE  #
      ##################
      - name: bump2version release
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          tox -e bumpversion-release

      ##########
      #  PyPI  #
      ##########
      - name: Release to PyPI
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          tox -e release
        env:
          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
      - name: bump2version patch
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          tox -e bumpversion -- patch
      - name: Push changes
        if: steps.update.outputs.BR_UPDATED == 'true'
        uses: ad-m/github-push-action@master
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          branch: ${{ github.ref }}
          tags: true

      - name: Sleep to avoid race conditions
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: |
          sleep 300

      ############
      #  DOCKER  #
      ############
      - name: Set up QEMU
        if: steps.update.outputs.BR_UPDATED == 'true'
        uses: docker/setup-qemu-action@v1
      - name: Set up Docker Buildx
        if: steps.update.outputs.BR_UPDATED == 'true'
        uses: docker/setup-buildx-action@v1
      - name: Login to DockerHub
        if: steps.update.outputs.BR_UPDATED == 'true'
        uses: docker/login-action@v1
        with:
          username: ${{ secrets.DOCKERHUB_USERNAME }}
          password: ${{ secrets.DOCKERHUB_TOKEN }}
      - name: Build and push
        if: steps.update.outputs.BR_UPDATED == 'true'
        id: docker_build
        uses: docker/build-push-action@v2
        with:
          push: true
          # See: https://github.com/docker/build-push-action/blob/master/docs/advanced/multi-platform.md
          platforms: linux/amd64,linux/arm64
          tags: biopragmatics/bioregistry:latest
      - name: Image digest
        if: steps.update.outputs.BR_UPDATED == 'true'
        run: echo ${{ steps.docker_build.outputs.digest }}