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[PkgEval] Mamba may have a testing issue on Julia 0.4 (2015-01-17) #22

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IainNZ opened this issue Jan 17, 2015 · 3 comments
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[PkgEval] Mamba may have a testing issue on Julia 0.4 (2015-01-17) #22

IainNZ opened this issue Jan 17, 2015 · 3 comments

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@IainNZ
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IainNZ commented Jan 17, 2015

PackageEvaluator.jl is a script that runs nightly. It attempts to load all Julia packages and run their tests (if available) on both the stable version of Julia (0.3) and the nightly build of the unstable version (0.4). The results of this script are used to generate a package listing enhanced with testing results.

On Julia 0.4

  • On 2015-01-16 the testing status was Tests fail, but package loads.
  • On 2015-01-17 the testing status changed to Package doesn't load.

Tests fail, but package loads. means that PackageEvaluator found the tests for your package, executed them, and they didn't pass. However, trying to load your package with using worked.

Package doesn't load. means that PackageEvaluator did not find tests for your package. Additionally, trying to load your package with using failed.

This issue was filed because your testing status became worse. No additional issues will be filed if your package remains in this state, and no issue will be filed if it improves. If you'd like to opt-out of these status-change messages, reply to this message saying you'd like to and @IainNZ will add an exception. If you'd like to discuss PackageEvaluator.jl please file an issue at the repository. For example, your package may be untestable on the test machine due to a dependency - an exception can be added.

Test log:

>>> 'Pkg.add("Mamba")' log
INFO: Installing Cairo v0.2.21
INFO: Installing Calculus v0.1.5
INFO: Installing Color v0.3.8
INFO: Installing Compose v0.3.10
INFO: Installing Contour v0.0.6
INFO: Installing DataStructures v0.3.5
INFO: Installing Distances v0.2.0
INFO: Installing Distributions v0.6.3
INFO: Installing DualNumbers v0.1.1
INFO: Installing FixedPointNumbers v0.0.6
INFO: Installing Gadfly v0.3.10
INFO: Installing Graphs v0.5.0
INFO: Installing Grid v0.3.7
INFO: Installing Hexagons v0.0.2
INFO: Installing ImmutableArrays v0.0.6
INFO: Installing Iterators v0.1.7
INFO: Installing KernelDensity v0.1.0
INFO: Installing Loess v0.0.3
INFO: Installing Mamba v0.4.3
INFO: Installing NaNMath v0.0.2
INFO: Installing Optim v0.4.0
INFO: Installing PDMats v0.3.1
INFO: Installing Showoff v0.0.3
INFO: Building Cairo
INFO: Package database updated

>>> 'using Mamba' log

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/Calculus/src/symbolic.jl:108.
Use "[]" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/Calculus/src/symbolic.jl:121.
Use "[]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Calculus/src/differentiate.jl:41.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Calculus/src/differentiate.jl:58.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Calculus/src/deparse.jl:1.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Color/src/names_data.jl:667.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Color/src/maps_data.jl:15.
... truncated ...

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:81.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:112.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:141.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:183.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:223.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:260.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:306.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/Optim/src/problems/unconstrained.jl:337.
Use "Any[a,b, ...]" instead.
(AbstractArray{T,N},DataArrays.DataArray{T,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{T,2},DataArrays.DataArray{T,2})(AbstractArray{T,N},DataArrays.AbstractDataArray{T,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{T,2},DataArrays.AbstractDataArray{T,2})(AbstractArray{Bool,N},DataArrays.DataArray{Bool,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{Bool,2},DataArrays.DataArray{Bool,2})(AbstractArray{T,N},DataArrays.DataArray{T,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{T,2},DataArrays.DataArray{T,2})(AbstractArray{Bool,N},DataArrays.AbstractDataArray{Bool,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{Bool,2},DataArrays.AbstractDataArray{Bool,2})(DataArrays.AbstractDataArray{T,N},AbstractArray{T,N})(AbstractArray{T,2},AbstractArray{T,2})(DataArrays.AbstractDataArray{T,2},AbstractArray{T,2})(AbstractArray{T,N},DataArrays.AbstractDataArray{T,N})(AbstractArray{T,2},AbstractArray{T,2})(AbstractArray{T,2},DataArrays.AbstractDataArray{T,2})ERROR: LoadError: LoadError: LoadError: UndefVarError: Triangular not defined
 in include at ./boot.jl:248
 in include_from_node1 at ./loading.jl:128
 in include at ./boot.jl:248
 in include_from_node1 at ./loading.jl:128
 in reload_path at ./loading.jl:152
 in _require at ./loading.jl:67
 in require at ./loading.jl:52
 in include at ./boot.jl:248
 in include_from_node1 at loading.jl:128
 in process_options at ./client.jl:312
 in _start at ./client.jl:396
while loading /home/idunning/pkgtest/.julia/v0.4/Mamba/src/distributions/pdmats2.jl, in expression starting on line 109
while loading /home/idunning/pkgtest/.julia/v0.4/Mamba/src/Mamba.jl, in expression starting on line 32
while loading /home/idunning/pkgtest/.julia/v0.4/Mamba/testusing.jl, in expression starting on line 2
Julia Version 0.4.0-dev+2756
Commit 4b20e10 (2015-01-17 03:18 UTC)
Platform Info:
  System: Linux (x86_64-unknown-linux-gnu)
  CPU: Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
  LAPACK: libopenblas
  LIBM: libopenlibm
  LLVM: libLLVM-3.3


>>> test log
no tests to run
>>> end of log
@IainNZ IainNZ mentioned this issue Jan 17, 2015
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@brian-j-smith brian-j-smith mentioned this issue Feb 5, 2015
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@brian-j-smith
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This PackageEvaluator error has been addressed in the https://github.com/brian-j-smith/Mamba.jl/tree/julia-0.4 branch by replacing the Triangular type being removed in julia 0.4 by the new UpperTriangular type. Mamba compatibility changes for the upcoming julia 0.4 version are being maintained in that julia-0.4 branch. Thanks.

@goedman
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goedman commented Feb 17, 2015

Thanks Brian, and as you clearly also found out, it is tricky to get a compatible set of packages on Julia 0.4. In my case it now hangs on the latest StatsBase update. With the (further!) improved Docile I was able to move back to 0.3 for some other work. Regards, Rob

@brian-j-smith
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Testing issues with julia 0.4 have been resolved.

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@goedman @IainNZ @brian-j-smith