.dockstore.yml

version: 1.2
workflows:
  - subclass: WDL
    name: GatherSampleEvidence
    primaryDescriptorPath: /wdl/GatherSampleEvidence.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: EvidenceQC
    primaryDescriptorPath: /wdl/EvidenceQC.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: TrainGCNV
    primaryDescriptorPath: /wdl/TrainGCNV.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: GatherBatchEvidence
    primaryDescriptorPath: /wdl/GatherBatchEvidence.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: ClusterBatch
    primaryDescriptorPath: /wdl/ClusterBatch.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: GenerateBatchMetrics
    primaryDescriptorPath: /wdl/GenerateBatchMetrics.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: FilterBatchSites
    primaryDescriptorPath: /wdl/FilterBatchSites.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: PlotSVCountsPerSample
    primaryDescriptorPath: /wdl/PlotSVCountsPerSample.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: FilterBatchSamples
    primaryDescriptorPath: /wdl/FilterBatchSamples.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: MergeBatchSites
    primaryDescriptorPath: /wdl/MergeBatchSites.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: GenotypeBatch
    primaryDescriptorPath: /wdl/GenotypeBatch.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: RegenotypeCNVs
    primaryDescriptorPath: /wdl/RegenotypeCNVs.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: CombineBatches
    primaryDescriptorPath: /wdl/CombineBatches.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: ResolveComplexVariants
    primaryDescriptorPath: /wdl/ResolveComplexVariants.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: GenotypeComplexVariants
    primaryDescriptorPath: /wdl/GenotypeComplexVariants.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: CleanVcf
    primaryDescriptorPath: /wdl/CleanVcf.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: RefineComplexVariants
    primaryDescriptorPath: /wdl/RefineComplexVariants.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: JoinRawCalls
    primaryDescriptorPath: /wdl/JoinRawCalls.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: SVConcordance
    primaryDescriptorPath: /wdl/SVConcordance.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: FilterGenotypes
    primaryDescriptorPath: /wdl/FilterGenotypes.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: MainVcfQc
    primaryDescriptorPath: /wdl/MainVcfQc.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: AnnotateVcf
    primaryDescriptorPath: /wdl/AnnotateVcf.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: Vapor
    primaryDescriptorPath: /wdl/Vapor.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: VisualizeCnvs
    primaryDescriptorPath: /wdl/VisualizeCnvs.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/

  - subclass: WDL
    name: SingleSamplePipeline
    primaryDescriptorPath: /wdl/GATKSVPipelineSingleSample.wdl
    filters:
      branches:
        - main
      tags:
        - /.*/