From 1d78766045a8050a5c1c3d44fe6e0740d7128891 Mon Sep 17 00:00:00 2001 From: Vahid Date: Wed, 13 Nov 2024 09:36:50 -0500 Subject: [PATCH] Replace relative paths with abs paths to JS components (#747) * Replace relative path with abs path to the component. * Make abs path more portable. --- website/docs/modules/annotate_vcf.md | 2 +- website/docs/modules/clean_vcf.md | 2 +- website/docs/modules/cluster_batch.md | 2 +- website/docs/modules/combine_batches.md | 2 +- website/docs/modules/evidence_qc.md | 2 +- website/docs/modules/filter_batch.md | 2 +- website/docs/modules/filter_genotypes.md | 2 +- website/docs/modules/gather_batch_evidence.md | 2 +- website/docs/modules/gather_sample_evidence.md | 2 +- website/docs/modules/genotype_complex.md | 2 +- website/docs/modules/main_vcf_qc.md | 2 +- website/docs/modules/refine_cpx.md | 2 +- website/docs/modules/resolve_complex.md | 2 +- website/docs/modules/train_gcnv.md | 2 +- 14 files changed, 14 insertions(+), 14 deletions(-) diff --git a/website/docs/modules/annotate_vcf.md b/website/docs/modules/annotate_vcf.md index b0df24e5c..88ccdae72 100644 --- a/website/docs/modules/annotate_vcf.md +++ b/website/docs/modules/annotate_vcf.md @@ -5,7 +5,7 @@ sidebar_position: 20 slug: av --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" Adds annotations, such as the inferred function and allele frequencies of variants, to a VCF. diff --git a/website/docs/modules/clean_vcf.md b/website/docs/modules/clean_vcf.md index 66d56d0f5..48630d807 100644 --- a/website/docs/modules/clean_vcf.md +++ b/website/docs/modules/clean_vcf.md @@ -5,7 +5,7 @@ sidebar_position: 14 slug: cvcf --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/CleanVcf.wdl) diff --git a/website/docs/modules/cluster_batch.md b/website/docs/modules/cluster_batch.md index 0885d8aa7..46c1d20d9 100644 --- a/website/docs/modules/cluster_batch.md +++ b/website/docs/modules/cluster_batch.md @@ -5,7 +5,7 @@ sidebar_position: 5 slug: cb --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/ClusterBatch.wdl) diff --git a/website/docs/modules/combine_batches.md b/website/docs/modules/combine_batches.md index 1fe6f5b14..dabf40427 100644 --- a/website/docs/modules/combine_batches.md +++ b/website/docs/modules/combine_batches.md @@ -5,7 +5,7 @@ sidebar_position: 11 slug: cmb --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/CombineBatches.wdl) diff --git a/website/docs/modules/evidence_qc.md b/website/docs/modules/evidence_qc.md index 6d1a35328..09efe40d8 100644 --- a/website/docs/modules/evidence_qc.md +++ b/website/docs/modules/evidence_qc.md @@ -5,7 +5,7 @@ sidebar_position: 2 slug: eqc --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/EvidenceQC.wdl) diff --git a/website/docs/modules/filter_batch.md b/website/docs/modules/filter_batch.md index 94d28f281..72602ad34 100644 --- a/website/docs/modules/filter_batch.md +++ b/website/docs/modules/filter_batch.md @@ -5,7 +5,7 @@ sidebar_position: 7 slug: fb --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/FilterBatch.wdl) diff --git a/website/docs/modules/filter_genotypes.md b/website/docs/modules/filter_genotypes.md index 8f9ac445d..4d03adb5b 100644 --- a/website/docs/modules/filter_genotypes.md +++ b/website/docs/modules/filter_genotypes.md @@ -5,7 +5,7 @@ sidebar_position: 19 slug: fg --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/FilterGenotypes.wdl) diff --git a/website/docs/modules/gather_batch_evidence.md b/website/docs/modules/gather_batch_evidence.md index e06b75b8d..fb688a2c4 100644 --- a/website/docs/modules/gather_batch_evidence.md +++ b/website/docs/modules/gather_batch_evidence.md @@ -5,7 +5,7 @@ sidebar_position: 4 slug: gbe --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GatherBatchEvidence.wdl) diff --git a/website/docs/modules/gather_sample_evidence.md b/website/docs/modules/gather_sample_evidence.md index ca24b6a67..b23de3c1c 100644 --- a/website/docs/modules/gather_sample_evidence.md +++ b/website/docs/modules/gather_sample_evidence.md @@ -5,7 +5,7 @@ sidebar_position: 1 slug: gse --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GatherSampleEvidence.wdl) diff --git a/website/docs/modules/genotype_complex.md b/website/docs/modules/genotype_complex.md index 8b4c88929..77568e5e9 100644 --- a/website/docs/modules/genotype_complex.md +++ b/website/docs/modules/genotype_complex.md @@ -5,7 +5,7 @@ sidebar_position: 13 slug: gcv --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GenotypeComplexVariants.wdl) diff --git a/website/docs/modules/main_vcf_qc.md b/website/docs/modules/main_vcf_qc.md index cfc397698..ca702c955 100644 --- a/website/docs/modules/main_vcf_qc.md +++ b/website/docs/modules/main_vcf_qc.md @@ -5,7 +5,7 @@ sidebar_position: 21 slug: mvqc --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/MainVcfQC.wdl) diff --git a/website/docs/modules/refine_cpx.md b/website/docs/modules/refine_cpx.md index b730744ff..01e0164d5 100644 --- a/website/docs/modules/refine_cpx.md +++ b/website/docs/modules/refine_cpx.md @@ -5,7 +5,7 @@ sidebar_position: 15 slug: refcv --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/RefineComplexVariants.wdl) diff --git a/website/docs/modules/resolve_complex.md b/website/docs/modules/resolve_complex.md index 5121e1a12..b292609fb 100644 --- a/website/docs/modules/resolve_complex.md +++ b/website/docs/modules/resolve_complex.md @@ -5,7 +5,7 @@ sidebar_position: 12 slug: rcv --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/ResolveComplexVariants.wdl) diff --git a/website/docs/modules/train_gcnv.md b/website/docs/modules/train_gcnv.md index abd45ba8e..2d0f9b4ad 100644 --- a/website/docs/modules/train_gcnv.md +++ b/website/docs/modules/train_gcnv.md @@ -5,7 +5,7 @@ sidebar_position: 3 slug: gcnv --- -import { Highlight, HighlightOptionalArg } from "../../src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/TrainGCNV.wdl)