From 6469e8808d8daf6a6b385d1562dfbba04711a3b9 Mon Sep 17 00:00:00 2001 From: Karan Jaisingh Date: Thu, 9 Jan 2025 16:19:43 -0500 Subject: [PATCH] Remove mention of variant filtering from GenerateBatchMetrics documentation (#769) Remove filtering from GenerateBatchMetrics docs --- website/docs/execution/joint.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/website/docs/execution/joint.md b/website/docs/execution/joint.md index 4105e4edc..20569449d 100644 --- a/website/docs/execution/joint.md +++ b/website/docs/execution/joint.md @@ -66,7 +66,7 @@ algorithms (Manta, MELT, and Wham), read depth (RD), split read positions (SR), 6. `04-GatherBatchEvidence`: Per-batch copy number variant calling using cn.MOPS and GATK gCNV; B-allele frequency (BAF) generation; call and evidence aggregation 7. `05-ClusterBatch`: Per-batch variant clustering -8. `06-GenerateBatchMetrics`: Per-batch variant filtering, metric generation +8. `06-GenerateBatchMetrics`: Per-batch metric generation 9. `07-FilterBatchSites`: Per-batch variant filtering and plot SV counts per sample per SV type to enable choice of IQR cutoff for outlier filtration in `08-FilterBatchSamples` 10. `08-FilterBatchSamples`: Per-batch outlier sample filtration