From d4f0c3d5d4bfef03dea8ad062c92e66fc87bc031 Mon Sep 17 00:00:00 2001 From: VJalili Date: Tue, 12 Nov 2024 14:31:24 -0500 Subject: [PATCH] Make abs path more portable. --- website/docs/modules/annotate_vcf.md | 2 +- website/docs/modules/clean_vcf.md | 2 +- website/docs/modules/cluster_batch.md | 2 +- website/docs/modules/combine_batches.md | 2 +- website/docs/modules/evidence_qc.md | 2 +- website/docs/modules/filter_batch.md | 2 +- website/docs/modules/filter_genotypes.md | 2 +- website/docs/modules/gather_batch_evidence.md | 2 +- website/docs/modules/gather_sample_evidence.md | 2 +- website/docs/modules/genotype_complex.md | 2 +- website/docs/modules/main_vcf_qc.md | 2 +- website/docs/modules/refine_cpx.md | 2 +- website/docs/modules/resolve_complex.md | 2 +- website/docs/modules/train_gcnv.md | 2 +- 14 files changed, 14 insertions(+), 14 deletions(-) diff --git a/website/docs/modules/annotate_vcf.md b/website/docs/modules/annotate_vcf.md index a03a42802..88ccdae72 100644 --- a/website/docs/modules/annotate_vcf.md +++ b/website/docs/modules/annotate_vcf.md @@ -5,7 +5,7 @@ sidebar_position: 20 slug: av --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" Adds annotations, such as the inferred function and allele frequencies of variants, to a VCF. diff --git a/website/docs/modules/clean_vcf.md b/website/docs/modules/clean_vcf.md index 1f7fe43de..48630d807 100644 --- a/website/docs/modules/clean_vcf.md +++ b/website/docs/modules/clean_vcf.md @@ -5,7 +5,7 @@ sidebar_position: 14 slug: cvcf --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/CleanVcf.wdl) diff --git a/website/docs/modules/cluster_batch.md b/website/docs/modules/cluster_batch.md index d232a1d0d..46c1d20d9 100644 --- a/website/docs/modules/cluster_batch.md +++ b/website/docs/modules/cluster_batch.md @@ -5,7 +5,7 @@ sidebar_position: 5 slug: cb --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/ClusterBatch.wdl) diff --git a/website/docs/modules/combine_batches.md b/website/docs/modules/combine_batches.md index d0e030e9c..dabf40427 100644 --- a/website/docs/modules/combine_batches.md +++ b/website/docs/modules/combine_batches.md @@ -5,7 +5,7 @@ sidebar_position: 11 slug: cmb --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/CombineBatches.wdl) diff --git a/website/docs/modules/evidence_qc.md b/website/docs/modules/evidence_qc.md index e8483636e..09efe40d8 100644 --- a/website/docs/modules/evidence_qc.md +++ b/website/docs/modules/evidence_qc.md @@ -5,7 +5,7 @@ sidebar_position: 2 slug: eqc --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/EvidenceQC.wdl) diff --git a/website/docs/modules/filter_batch.md b/website/docs/modules/filter_batch.md index ca146fde2..72602ad34 100644 --- a/website/docs/modules/filter_batch.md +++ b/website/docs/modules/filter_batch.md @@ -5,7 +5,7 @@ sidebar_position: 7 slug: fb --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/FilterBatch.wdl) diff --git a/website/docs/modules/filter_genotypes.md b/website/docs/modules/filter_genotypes.md index 4008efc4e..4d03adb5b 100644 --- a/website/docs/modules/filter_genotypes.md +++ b/website/docs/modules/filter_genotypes.md @@ -5,7 +5,7 @@ sidebar_position: 19 slug: fg --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/FilterGenotypes.wdl) diff --git a/website/docs/modules/gather_batch_evidence.md b/website/docs/modules/gather_batch_evidence.md index fd7305c62..fb688a2c4 100644 --- a/website/docs/modules/gather_batch_evidence.md +++ b/website/docs/modules/gather_batch_evidence.md @@ -5,7 +5,7 @@ sidebar_position: 4 slug: gbe --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GatherBatchEvidence.wdl) diff --git a/website/docs/modules/gather_sample_evidence.md b/website/docs/modules/gather_sample_evidence.md index 0e09d827d..b23de3c1c 100644 --- a/website/docs/modules/gather_sample_evidence.md +++ b/website/docs/modules/gather_sample_evidence.md @@ -5,7 +5,7 @@ sidebar_position: 1 slug: gse --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GatherSampleEvidence.wdl) diff --git a/website/docs/modules/genotype_complex.md b/website/docs/modules/genotype_complex.md index f45deb95a..77568e5e9 100644 --- a/website/docs/modules/genotype_complex.md +++ b/website/docs/modules/genotype_complex.md @@ -5,7 +5,7 @@ sidebar_position: 13 slug: gcv --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GenotypeComplexVariants.wdl) diff --git a/website/docs/modules/main_vcf_qc.md b/website/docs/modules/main_vcf_qc.md index 5533358f7..ca702c955 100644 --- a/website/docs/modules/main_vcf_qc.md +++ b/website/docs/modules/main_vcf_qc.md @@ -5,7 +5,7 @@ sidebar_position: 21 slug: mvqc --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/MainVcfQC.wdl) diff --git a/website/docs/modules/refine_cpx.md b/website/docs/modules/refine_cpx.md index c7b15b299..01e0164d5 100644 --- a/website/docs/modules/refine_cpx.md +++ b/website/docs/modules/refine_cpx.md @@ -5,7 +5,7 @@ sidebar_position: 15 slug: refcv --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/RefineComplexVariants.wdl) diff --git a/website/docs/modules/resolve_complex.md b/website/docs/modules/resolve_complex.md index 39914dede..b292609fb 100644 --- a/website/docs/modules/resolve_complex.md +++ b/website/docs/modules/resolve_complex.md @@ -5,7 +5,7 @@ sidebar_position: 12 slug: rcv --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/ResolveComplexVariants.wdl) diff --git a/website/docs/modules/train_gcnv.md b/website/docs/modules/train_gcnv.md index 23d68a83c..2d0f9b4ad 100644 --- a/website/docs/modules/train_gcnv.md +++ b/website/docs/modules/train_gcnv.md @@ -5,7 +5,7 @@ sidebar_position: 3 slug: gcnv --- -import { Highlight, HighlightOptionalArg } from "/src/components/highlight.js" +import { Highlight, HighlightOptionalArg } from "@site/src/components/highlight.js" [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/TrainGCNV.wdl)