From 04ae2476cbbf02722ce64cfe5d7e110ce5954222 Mon Sep 17 00:00:00 2001 From: Emma Pierce-Hoffman Date: Tue, 2 Jul 2024 14:37:05 -0400 Subject: [PATCH 1/2] update gatk docker with changes to handle CPX_TYPE for CTX --- inputs/values/dockers.json | 2 +- inputs/values/dockers_azure.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/inputs/values/dockers.json b/inputs/values/dockers.json index 8752f26e8..68a1131d2 100644 --- a/inputs/values/dockers.json +++ b/inputs/values/dockers.json @@ -2,7 +2,7 @@ "name": "dockers", "cnmops_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/cnmops:2024-06-04-v0.28.5-beta-a8dfecba", "condense_counts_docker": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432", - "gatk_docker": "us.gcr.io/broad-dsde-methods/eph/gatk:2024-02-16-4.5.0.0-8-gcfd4d87ec-NIGHTLY-SNAPSHOT", + "gatk_docker": "us.gcr.io/broad-dsde-methods/eph/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT", "gatk_docker_pesr_override": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432", "genomes_in_the_cloud_docker": "us.gcr.io/broad-gotc-prod/genomes-in-the-cloud:2.3.2-1510681135", "linux_docker": "marketplace.gcr.io/google/ubuntu1804", diff --git a/inputs/values/dockers_azure.json b/inputs/values/dockers_azure.json index 7bcea7dd8..7b877797f 100644 --- a/inputs/values/dockers_azure.json +++ b/inputs/values/dockers_azure.json @@ -2,7 +2,7 @@ "name": "dockers", "cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2024-06-04-v0.28.5-beta-a8dfecba", "condense_counts_docker": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", - "gatk_docker": "vahid.azurecr.io/gatk-sv/gatk:2024-02-16-4.5.0.0-8-gcfd4d87ec-NIGHTLY-SNAPSHOT", + "gatk_docker": "http://vahid.azurecr.io/gatk-sv/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT", "gatk_docker_pesr_override": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", "genomes_in_the_cloud_docker": "vahid.azurecr.io/genomes-in-the-cloud:2.3.2-1510681135", "linux_docker": "vahid.azurecr.io/google/ubuntu1804", From edd5a7f40cd857a153601c1962decd5b79782aca Mon Sep 17 00:00:00 2001 From: Emma Pierce-Hoffman Date: Tue, 2 Jul 2024 14:40:20 -0400 Subject: [PATCH 2/2] fix azure docker link --- inputs/values/dockers_azure.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inputs/values/dockers_azure.json b/inputs/values/dockers_azure.json index 7b877797f..d639b7626 100644 --- a/inputs/values/dockers_azure.json +++ b/inputs/values/dockers_azure.json @@ -2,7 +2,7 @@ "name": "dockers", "cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2024-06-04-v0.28.5-beta-a8dfecba", "condense_counts_docker": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", - "gatk_docker": "http://vahid.azurecr.io/gatk-sv/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT", + "gatk_docker": "vahid.azurecr.io/gatk-sv/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT", "gatk_docker_pesr_override": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", "genomes_in_the_cloud_docker": "vahid.azurecr.io/genomes-in-the-cloud:2.3.2-1510681135", "linux_docker": "vahid.azurecr.io/google/ubuntu1804",