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For example:
lichtens@OncobuntuMk6:~$ more /home/lichtens/work/ob_filtered2.tmp.vcf.summary Sample Artifact_Mode Artifact_Mode_Complement OBQ Num_Artifact_Mode Num_Artifact_Mode_Filtered Num_Not_Artifact_Mode Num_NonRef_Passing_Variants SAMPLE1Tumor C>T G>A 42.68076887123618 82339 0 205577 287916 SAMPLE1Tumor G>T C>A 32.01295410609514 36517 0 251399 287916 lichtens@OncobuntuMk6:~$ egrep orientation_bias /home/lichtens/work/ob_filtered2.tmp.vcf | wc -l 26279
Not high priority.
Just stems from the VariantContext now being filtered as well as the genotype. Fix can be placed in OrientationBiasUtils.getGenotypeStream
OrientationBiasUtils.getGenotypeStream
The text was updated successfully, but these errors were encountered:
LeeTL1220
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For example:
Not high priority.
Just stems from the VariantContext now being filtered as well as the genotype. Fix can be placed in
OrientationBiasUtils.getGenotypeStream
The text was updated successfully, but these errors were encountered: