From 4625844b52fce9c3bc2ef6dffbbc09a92cb7e0d9 Mon Sep 17 00:00:00 2001
From: Gavin Ha <gavinha@users.noreply.github.com>
Date: Wed, 9 Aug 2017 17:52:20 -0400
Subject: [PATCH] Delete ichorCNA.Rnw

---
 vignettes/ichorCNA.Rnw | 27 ---------------------------
 1 file changed, 27 deletions(-)
 delete mode 100644 vignettes/ichorCNA.Rnw

diff --git a/vignettes/ichorCNA.Rnw b/vignettes/ichorCNA.Rnw
deleted file mode 100644
index e1f39ac..0000000
--- a/vignettes/ichorCNA.Rnw
+++ /dev/null
@@ -1,27 +0,0 @@
-% \VignetteIndexEntry{ichorCNA}
-% \VignetteDepends{ichorCNA, HMMcopy}
-
-\title{ichorCNA: Estimation of tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.}
-\author{Gavin Ha, Justin Rhoades, Samuel Freeman}
-\date{\today}
-
-\begin{document}
-
-\maketitle
-\tableofcontents
-
-\section{Introduction}
-
-ichorCNA is a tool for estimating the fraction of tumor in ultra-low-pass whole genome sequencing (ULP-WGS) of cell-free DNA.
-
-\section{Analysis}
-
-<<>>=
-library(HMMcopy)
-tumor_file <- system.file("extdata", "MBC_315.ctDNA.reads.wig",
-                      package = "ichorCNA")
-
-tumor_reads <- wigToRangedData(tumor_file)
-@
-
-\end{document}
\ No newline at end of file