diff --git a/pipelines/broad/dna_seq/germline/joint_genotyping/wgs/JointGenotyping.inputs.json b/pipelines/broad/dna_seq/germline/joint_genotyping/wgs/JointGenotyping.inputs.json index 189ea660be..30de0d3aad 100644 --- a/pipelines/broad/dna_seq/germline/joint_genotyping/wgs/JointGenotyping.inputs.json +++ b/pipelines/broad/dna_seq/germline/joint_genotyping/wgs/JointGenotyping.inputs.json @@ -5,7 +5,7 @@ "JointGenotyping.SplitIntervalList.scatter_mode": "INTERVAL_COUNT_WITH_DISTRIBUTED_REMAINDER", "JointGenotyping.SplitIntervalList.extra_args": "--dont-mix-contigs", - "JointGenotyping.unpadded_intervals_file": "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list", + "JointGenotyping.unpadded_intervals_file": "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.handcurated.noCentromeres.noTelomeres.interval_list", "JointGenotyping.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta", "JointGenotyping.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai", "JointGenotyping.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",