diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 518d5ee..b4f6bd2 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -7,88 +7,96 @@ on: - published jobs: - checks: - name: "Run Tests" + lint: + name: "lint" runs-on: ubuntu-latest steps: - uses: actions/checkout@v2 - name: Set up Python uses: actions/setup-python@v2 with: - python-version: '3.9' - - name: Set up Pre-commit + python-version: '3.10' + - name: Run pre-commit uses: pre-commit/action@v2.0.0 - - name: Install dependencies - run: | - python -m pip install --upgrade pip - python -m pip install -r requirements.txt - python -m pip install . + test: + name: "test" + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.10' + - name: Install poetry + uses: abatilo/actions-poetry@v2.0.0 - uses: google-github-actions/setup-gcloud@v0 with: service_account_key: ${{ secrets.GCP_SA_KEY }} export_default_credentials: true + - name: Install dependencies + run: poetry install - name: Run tests - run: | - pytest + run: poetry run pytest - release: + pypi: name: "Release to PyPI" runs-on: ubuntu-latest - needs: checks + needs: + - lint + - test if: "github.event_name == 'release' && startsWith(github.event.release.tag_name, 'v')" steps: - - uses: actions/checkout@v2 - - name: "Set up Python" - uses: actions/setup-python@v2 + - uses: actions/setup-python@v2 with: - python-version: '3.9' - - name: "Build package" - run: | - python setup.py build sdist - - - name: "TEST Upload to PyPI" - uses: pypa/gh-action-pypi-publish@release/v1 + python-version: '3.10' + - name: "Upload to TEST PyPI" + uses: JRubics/poetry-publish@v1.11 if: github.event.release.prerelease with: - user: __token__ - password: ${{ secrets.PYPI_TEST_API_TOKEN }} + repository_name: testpypi repository_url: https://test.pypi.org/legacy/ - + repository_username: __token__ + repository_password: ${{ secrets.PYPI_TEST_API_TOKEN }} + build_format: "sdist" - name: "Upload to PyPI" - uses: pypa/gh-action-pypi-publish@release/v1 + uses: JRubics/poetry-publish@v1.11 if: "!github.event.release.prerelease" with: - user: __token__ - password: ${{ secrets.PYPI_API_TOKEN }} + repository_username: __token__ + repository_password: ${{ secrets.PYPI_API_TOKEN }} + build_format: "sdist" - build_push: - name: Package docker image - runs-on: ubuntu-18.04 - needs: ["checks", "release"] - if: "success('checks') && !failure('release')" - steps: - #- uses: actions/checkout@v2 - - name: Login to GitHub Container Registry - uses: docker/login-action@v1 - with: - registry: ghcr.io - username: ${{ github.actor }} - password: ${{ secrets.GITHUB_TOKEN }} - - # build release image ---- - - name: "Release: Build and push" - uses: docker/build-push-action@v2 - if: ${{ github.event_name == 'release' && startsWith(github.event.release.tag_name, 'hub') }} - with: - push: true - tags: ghcr.io/${{github.repository}}:${{ github.event.release.tag_name }} - - # build any image pushed on a branch starting with development ---- - - name: "Development: Build and push" - uses: docker/build-push-action@v2 - if: ${{ github.event_name != 'release' && startsWith(github.ref_name, 'development') }} - with: - push: true - tags: ghcr.io/${{github.repository}}:${{github.ref_name}} +# This is disabled for now; I don't hate the image definition living here, but the CI/CD is overly complicated I think +# build_push: +# name: Package docker image +# runs-on: ubuntu-18.04 +# needs: +# - lint +# - test +# - release +# if: "success('lint') && success('test') && !failure('release')" +# steps: +# - name: Login to GitHub Container Registry +# uses: docker/login-action@v1 +# with: +# registry: ghcr.io +# username: ${{ github.actor }} +# password: ${{ secrets.GITHUB_TOKEN }} +# +# # build release image ---- +# - name: "Release: Build and push" +# uses: docker/build-push-action@v2 +# if: ${{ github.event_name == 'release' && startsWith(github.event.release.tag_name, 'hub') }} +# with: +# push: true +# tags: ghcr.io/${{github.repository}}:${{ github.event.release.tag_name }} +# +# # build any image pushed on a branch starting with development ---- +# - name: "Development: Build and push" +# uses: docker/build-push-action@v2 +# if: ${{ github.event_name != 'release' && startsWith(github.ref_name, 'development') }} +# with: +# push: true +# tags: ghcr.io/${{github.repository}}:${{github.ref_name}} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4324be9..956644a 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -3,6 +3,7 @@ repos: rev: v2.4.0 hooks: - id: flake8 + args: ["--ignore=E203,E501,W503"] # rely on black for these types: - python - id: trailing-whitespace @@ -20,3 +21,8 @@ repos: - id: bandit args: ["-ll", "--skip=B108,B608,B701"] files: .py$ + - repo: https://github.com/pycqa/isort + rev: 5.10.1 + hooks: + - id: isort + args: ["--profile", "black", "--filter-files"] diff --git a/calitp/__init__.py b/calitp/__init__.py index 2ec5994..20ebb58 100644 --- a/calitp/__init__.py +++ b/calitp/__init__.py @@ -1,6 +1,4 @@ # flake8: noqa -__version__ = "0.0.16" - -from .sql import get_table, write_table, query_sql, to_snakecase, get_engine -from .storage import save_to_gcfs, read_gcfs +from .sql import get_engine, get_table, query_sql, to_snakecase, write_table +from .storage import read_gcfs, save_to_gcfs diff --git a/calitp/__main__.py b/calitp/__main__.py index 80452aa..1c39821 100644 --- a/calitp/__main__.py +++ b/calitp/__main__.py @@ -1,7 +1,9 @@ -from calitp.protobuff import get_random_protobuff import datetime + import typer +from calitp.protobuff import get_random_protobuff + app = typer.Typer() diff --git a/calitp/config.py b/calitp/config.py index 3d1f4ab..2c6a736 100644 --- a/calitp/config.py +++ b/calitp/config.py @@ -1,10 +1,8 @@ import os import warnings - from contextlib import contextmanager -from pathlib import Path from functools import wraps - +from pathlib import Path CALITP_BQ_MAX_BYTES = os.environ.get("CALITP_BQ_MAX_BYTES", 5_000_000_000) CALITP_BQ_LOCATION = os.environ.get("CALITP_BQ_LOCATION", "us-west2") diff --git a/calitp/magics.py b/calitp/magics.py index b0a7e0a..ecc8892 100644 --- a/calitp/magics.py +++ b/calitp/magics.py @@ -1,8 +1,10 @@ import json + +from IPython import get_ipython from IPython.core.magic import register_cell_magic from IPython.core.magic_arguments import argument, magic_arguments, parse_argstring from IPython.display import Markdown, display -from IPython import get_ipython + from calitp.sql import query_sql diff --git a/calitp/protobuff.py b/calitp/protobuff.py index 22583d2..49b2b9d 100644 --- a/calitp/protobuff.py +++ b/calitp/protobuff.py @@ -1,10 +1,12 @@ -from calitp.storage import get_fs import datetime -from google.protobuf import json_format -from google.transit import gtfs_realtime_pb2 import json import random +from google.protobuf import json_format +from google.transit import gtfs_realtime_pb2 + +from calitp.storage import get_fs + def get_random_protobuff(glob, bucket="gtfs-data", date="", format="protobuff"): date = date.strip("*") # ignore ending asterix diff --git a/calitp/sql.py b/calitp/sql.py index 29f47b4..deda83d 100644 --- a/calitp/sql.py +++ b/calitp/sql.py @@ -1,18 +1,21 @@ import os -import pandas as pd - from functools import singledispatch -from sqlalchemy.sql.expression import Executable, ClauseElement + +import pandas as pd +import yaml +from jinja2 import Environment +from sqlalchemy import MetaData, Table, create_engine, sql from sqlalchemy.ext.compiler import compiles -from sqlalchemy import create_engine, Table, MetaData, sql +from sqlalchemy.sql.expression import ClauseElement, Executable from .config import ( - CALITP_BQ_MAX_BYTES, CALITP_BQ_LOCATION, + CALITP_BQ_MAX_BYTES, format_table_name, get_project_id, require_pipeline, ) +from .templates import user_defined_filters, user_defined_macros class CreateTableAs(Executable, ClauseElement): @@ -113,10 +116,6 @@ def _write_table_df(sql_stmt, table_name, engine=None, replace=True): def query_sql(fname, write_as=None, replace=False, dry_run=False, as_df=True): - import yaml - from jinja2 import Environment - from .templates import user_defined_filters, user_defined_macros - if fname.endswith(".yml") or fname.endswith(".yaml"): config = yaml.safe_load(open(fname)) diff --git a/calitp/storage.py b/calitp/storage.py index 3008490..55f53fc 100644 --- a/calitp/storage.py +++ b/calitp/storage.py @@ -1,6 +1,23 @@ +import abc +import base64 +import gzip +import json +import logging +import os +import re +from enum import Enum +from typing import ClassVar, Dict, List, Optional, Type, Union, get_type_hints + import gcsfs +import humanize +import pendulum +from pydantic import BaseModel, Field, HttpUrl, validator +from pydantic.class_validators import root_validator +from pydantic.tools import parse_obj_as +from requests import Request +from typing_extensions import Annotated, Literal -from .config import is_cloud, get_bucket, require_pipeline +from .config import get_bucket, is_cloud, is_development, require_pipeline def get_fs(gcs_project="", **kwargs): @@ -67,3 +84,396 @@ def read_gcfs(src_path, dst_path=None, gcs_project="", bucket=None, verbose=True raise NotImplementedError() return full_src_path + + +def make_name_bq_safe(name: str): + """Replace non-word characters. + See: https://cloud.google.com/bigquery/docs/reference/standard-sql/lexical#identifiers.""" + return str.lower(re.sub("[^\w]", "_", name)) # noqa: W605 + + +def prefix_bucket(bucket): + # TODO: use once we're in python 3.9+ + # bucket = bucket.removeprefix("gs://") + bucket = bucket.replace("gs://", "") + return f"gs://test-{bucket}" if is_development() else f"gs://{bucket}" + + +PARTITIONED_ARTIFACT_METADATA_KEY = "PARTITIONED_ARTIFACT_METADATA" + +PartitionType = Union[str, int, pendulum.DateTime, pendulum.Date, pendulum.Time] + +PARTITION_SERIALIZERS = { + str: str, + int: str, + pendulum.DateTime: lambda dt: dt.to_iso8601_string(), + pendulum.Date: lambda d: d.strftime("%Y-%m-%d"), + pendulum.Time: lambda t: t.format("HH:mm:ss"), +} + +PARTITION_DESERIALIZERS = { + str: str, + int: int, + pendulum.DateTime: lambda s: pendulum.parse(s, exact=True), + pendulum.Date: lambda s: pendulum.parse(s, exact=True), + pendulum.Time: lambda s: pendulum.parse(s, exact=True), +} + + +def partition_map(path) -> Dict[str, PartitionType]: + return {key: value for key, value in re.findall(r"/(\w+)=([\w\-:=]+)(?=/)", path.lower())} + + +# class GTFSFeedType(str, Enum): +# schedule = "schedule" +# rt = "rt" + + +class GTFSFeedType(str, Enum): + schedule = "schedule" + service_alerts = "service_alerts" + trip_updates = "trip_updates" + vehicle_positions = "vehicle_positions" + + +class AirtableGTFSDataRecord(BaseModel): + name: str + uri: Optional[str] + data: GTFSFeedType + data_quality_pipeline: Optional[bool] + schedule_to_use_for_rt_validation: Optional[List[str]] + auth_query_param: Dict[str, str] = {} + # TODO: add auth_headers when available in Airtable! + + class Config: + extra = "allow" + + @validator("data", pre=True, allow_reuse=True) + def convert_feed_type(cls, v): + if "schedule" in v.lower(): + return GTFSFeedType.schedule + elif "vehicle" in v.lower(): + return GTFSFeedType.vehicle_positions + elif "trip" in v.lower(): + return GTFSFeedType.trip_updates + elif "alerts" in v.lower(): + return GTFSFeedType.service_alerts + return v + + @property + def schedule_url(self) -> Optional[HttpUrl]: + # TODO: implement me + raise NotImplementedError + + @property + def auth_header(self) -> Dict[str, str]: + return {} + + @property + def base64_encoded_url(self) -> str: + # see: https://docs.python.org/3/library/base64.html#base64.urlsafe_b64encode + # we care about replacing slashes for GCS object names + # can use: https://www.base64url.com/ to test encoding/decoding + # convert in bigquery: https://cloud.google.com/bigquery/docs/reference/standard-sql/string_functions#from_base64 + return base64.urlsafe_b64encode(self.uri.encode()).decode() + + def build_request(self, auth_dict: dict) -> Request: + params = {k: auth_dict[v] for k, v in self.auth_query_param.items()} + headers = {k: auth_dict[v] for k, v in self.auth_header.items()} + + # some web servers require user agents or they will throw a 4XX error + headers["User-Agent"] = "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.12; rv:55.0) Gecko/20100101 Firefox/55.0" + + # inspired by: https://stackoverflow.com/questions/18869074/create-url-without-request-execution + return Request( + "GET", + url=self.uri, + params=params, + headers=headers, + ) + + +class PartitionedGCSArtifact(BaseModel, abc.ABC): + """ + This class is designed to be subclassed to model "extracts", i.e. a particular + download of a given data source. + """ + + filename: str + + class Config: + json_encoders = { + pendulum.DateTime: lambda dt: dt.to_iso8601_string(), + } + + @property + @abc.abstractmethod + def bucket(self) -> str: + """Bucket name""" + + @property + @abc.abstractmethod + def table(self) -> str: + """Table name""" + + @classmethod + def bucket_table(cls) -> str: + bucket = cls.bucket.replace("gs://", "") + return f"gs://{bucket}/{cls.table}/" + + @property + @abc.abstractmethod + def partition_names(self) -> List[str]: + """ + Defines the partitions into which this artifact is organized. + The order does matter! + """ + + @property + def partition_types(self) -> Dict[str, Type[PartitionType]]: + return {} + + @root_validator(allow_reuse=True) + def check_partitions(cls, values): + cls_properties = [name for name in dir(cls) if isinstance(getattr(cls, name), property)] + missing = [name for name in cls.partition_names if name not in values and name not in cls_properties] + if missing: + raise ValueError(f"all partition names must exist as fields or properties; missing {missing}") + return values + + @property + def path(self): + return os.path.join( + self.bucket, + self.table, + *[ + f"{name}={PARTITION_SERIALIZERS[type(getattr(self, name))](getattr(self, name))}" + for name in self.partition_names + ], + self.filename, + ) + + def save_content(self, fs: gcsfs.GCSFileSystem, content: bytes, exclude=None): + logging.info(f"saving {humanize.naturalsize(len(content))} to {self.path}") + fs.pipe(path=self.path, value=content) + fs.setxattrs( + path=self.path, + # This syntax seems silly but it's so we pass the _value_ of PARTITIONED_ARTIFACT_METADATA_KEY + **{PARTITIONED_ARTIFACT_METADATA_KEY: self.json(exclude=exclude)}, + ) + + +def fetch_all_in_partition( + cls: Type[PartitionedGCSArtifact], + fs: gcsfs.GCSFileSystem, + bucket: str, + table: str, + partitions: Dict[str, PartitionType], +) -> List[Type[PartitionedGCSArtifact]]: + path = "/".join( + [ + bucket, + table, + *[f"{key}={value}" for key, value in partitions.items()], + ] + ) + files = parse_obj_as( + GCSObjectInfoList, + [v for _, _, files in list(fs.walk(path, detail=True)) for v in files.values()], + ) + return [ + parse_obj_as(cls, json.loads(fs.getxattr(file.name, PARTITIONED_ARTIFACT_METADATA_KEY))) + for file in files.__root__ + ] + + +class ProcessingOutcome(BaseModel, abc.ABC): + success: bool + exception: Optional[Exception] + input_record: BaseModel + + class Config: + arbitrary_types_allowed = True + json_encoders = {Exception: lambda e: str(e)} + + # TODO: is this really useful? + @property + @abc.abstractmethod + def input_type(self) -> Type[PartitionedGCSArtifact]: + """The input type that was processed to produce this outcome.""" + + +class GCSBaseInfo(BaseModel, abc.ABC): + bucket: str + name: str + + class Config: + extra = "ignore" + + @property + @abc.abstractmethod + def partition(self) -> Dict[str, str]: + pass + + +class GCSFileInfo(GCSBaseInfo): + type: Literal["file"] + size: int + md5Hash: str + + @property + def filename(self) -> str: + return os.path.basename(self.name) + + @property + def partition(self) -> Dict[str, str]: + return partition_map(self.name) + + +class GCSObjectInfoList(BaseModel): + __root__: List["GCSObjectInfo"] + + +class GCSDirectoryInfo(GCSBaseInfo): + type: Literal["directory"] + + @property + def partition(self) -> Dict[str, str]: + return partition_map(self.name + "/") + + def children(self, fs) -> List["GCSObjectInfo"]: + # TODO: this should work with a discriminated type but idk why it's not + return parse_obj_as(GCSObjectInfoList, [fs.info(child) for child in fs.ls(self.name)]).__root__ + + +GCSObjectInfo = Annotated[ + Union[GCSFileInfo, GCSDirectoryInfo], + Field(discriminator="type"), +] + +GCSObjectInfoList.update_forward_refs() + + +# TODO: we could probably pass this a class +def get_latest_file(table_path: str, partitions: Dict[str, Type[PartitionType]]) -> GCSFileInfo: + fs = get_fs() + directory = GCSDirectoryInfo(**fs.info(table_path)) + + for key, typ in partitions.items(): + directory = sorted( + directory.children(fs), + key=lambda o: PARTITION_DESERIALIZERS[typ](o.partition[key]), + reverse=True, + )[0] + + children = directory.children(fs) + # This is just a convention for us for now; we could also label files with metadata if desired + if len(children) != 1: + raise ValueError(f"found {len(directory.children(fs))} files rather than 1 in the directory {directory.name}") + + ret = children[0] + + # is there a way to have pydantic check this? + if not isinstance(ret, GCSFileInfo): + raise ValueError(f"encountered unexpected type {type(ret)} rather than GCSFileInfo") + + return ret + + +class AirtableGTFSDataExtract(PartitionedGCSArtifact): + bucket: ClassVar[str] = prefix_bucket("gs://calitp-airtable") + table: ClassVar[str] = "california_transit__gtfs_datasets" + partition_names: ClassVar[List[str]] = ["dt", "time"] + dt: pendulum.Date + time: pendulum.Time + records: List[AirtableGTFSDataRecord] + + # TODO: this should probably be abstracted somewhere... it's useful in lots of places, probably + @classmethod + def get_latest(cls) -> "AirtableGTFSDataExtract": + # TODO: this concatenation should live on the abstract base class probably + latest = get_latest_file( + cls.bucket_table(), + partitions={name: get_type_hints(cls).get(name, str) for name in cls.partition_names}, + ) + + logging.info(f"identified {latest.name} as the most recent extract of gtfs datasets") + + with get_fs().open(latest.name, "rb") as f: + content = gzip.decompress(f.read()).decode() + + records = [AirtableGTFSDataRecord(**json.loads(row)) for row in content.splitlines()] + + return AirtableGTFSDataExtract( + records=records, + filename=latest.filename, + dt=pendulum.parse(latest.partition["dt"], exact=True), + time=pendulum.parse(latest.partition["time"], exact=True), + ) + + +class GTFSFeedExtractInfo(PartitionedGCSArtifact): + # TODO: this should check whether the bucket exists https://stackoverflow.com/a/65628273 + # TODO: this should be named `gtfs-raw` _or_ we make it dynamic + bucket: ClassVar[str] = prefix_bucket("gs://calitp-gtfs-schedule-raw") + partition_names: ClassVar[List[str]] = ["dt", "base64_url", "time"] + config: AirtableGTFSDataRecord + response_code: int + response_headers: Optional[Dict[str, str]] + download_time: pendulum.DateTime + + @property + def table(self) -> GTFSFeedType: + return self.config.data + + @property + def dt(self) -> pendulum.Date: + return self.download_time.date() + + @property + def base64_url(self) -> str: + return self.config.base64_encoded_url + + @property + def time(self) -> pendulum.Time: + return self.download_time.time() + + +class AirtableGTFSDataRecordProcessingOutcome(ProcessingOutcome): + input_type: ClassVar[Type[PartitionedGCSArtifact]] = GTFSFeedExtractInfo + extract: Optional[GTFSFeedExtractInfo] + + +class DownloadFeedsResult(PartitionedGCSArtifact): + bucket: ClassVar[str] = prefix_bucket("gs://calitp-gtfs-schedule-raw") + table: ClassVar[str] = "download_schedule_feed_results" + partition_names: ClassVar[List[str]] = ["dt", "time"] + start_time: pendulum.DateTime + end_time: pendulum.DateTime + outcomes: List[AirtableGTFSDataRecordProcessingOutcome] + + @property + def dt(self) -> pendulum.Date: + return self.start_time.date() + + @property + def time(self) -> pendulum.Time: + return self.start_time.time() + + @property + def successes(self) -> List[AirtableGTFSDataRecordProcessingOutcome]: + return [outcome for outcome in self.outcomes if outcome.success] + + @property + def failures(self) -> List[AirtableGTFSDataRecordProcessingOutcome]: + return [outcome for outcome in self.outcomes if not outcome.success] + + # TODO: I dislike having to exclude the records here + # I need to figure out the best way to have a single type represent the "metadata" of + # the content as well as the content itself + def save(self, fs): + self.save_content( + fs=fs, + content="\n".join(o.json() for o in self.outcomes).encode(), + exclude={"outcomes"}, + ) diff --git a/calitp/tables.py b/calitp/tables.py index dea8e2e..0638773 100644 --- a/calitp/tables.py +++ b/calitp/tables.py @@ -1,7 +1,7 @@ from siuba.sql import LazyTbl -from .sql import get_engine from .config import is_development +from .sql import get_engine class AttributeDict: diff --git a/calitp/templates.py b/calitp/templates.py index 584a9ea..3a2caf8 100644 --- a/calitp/templates.py +++ b/calitp/templates.py @@ -1,4 +1,4 @@ -from .config import get_project_id, get_bucket, format_table_name +from .config import format_table_name, get_bucket, get_project_id user_defined_macros = dict( get_project_id=get_project_id, diff --git a/docs/index.md b/docs/index.md index 1c7b3e6..938a9da 100644 --- a/docs/index.md +++ b/docs/index.md @@ -2,7 +2,7 @@ ```python from calitp.tables import tbl -from calitp import query_sql +from calitp.import query_sql ``` diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..2892661 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1916 @@ +[[package]] +name = "aiohttp" +version = "3.8.1" +description = "Async http client/server framework (asyncio)" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +aiosignal = ">=1.1.2" +async-timeout = ">=4.0.0a3,<5.0" +attrs = ">=17.3.0" +charset-normalizer = ">=2.0,<3.0" +frozenlist = ">=1.1.1" +multidict = ">=4.5,<7.0" +yarl = ">=1.0,<2.0" + +[package.extras] +speedups = ["aiodns", "brotli", "cchardet"] + +[[package]] +name = "aiosignal" +version = "1.2.0" +description = "aiosignal: a list of registered asynchronous callbacks" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +frozenlist = ">=1.1.0" + +[[package]] +name = "async-timeout" +version = "4.0.2" +description = "Timeout context manager for asyncio programs" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "attrs" +version = "20.3.0" +description = "Classes Without Boilerplate" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] +docs = ["furo", "sphinx", "zope.interface"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] + +[[package]] +name = "black" +version = "22.6.0" +description = "The uncompromising code formatter." +category = "dev" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +click = ">=8.0.0" +mypy-extensions = ">=0.4.3" +pathspec = ">=0.9.0" +platformdirs = ">=2" +tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""} + +[package.extras] +colorama = ["colorama (>=0.4.3)"] +d = ["aiohttp (>=3.7.4)"] +jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] +uvloop = ["uvloop (>=0.15.2)"] + +[[package]] +name = "cachetools" +version = "5.2.0" +description = "Extensible memoizing collections and decorators" +category = "main" +optional = false +python-versions = "~=3.7" + +[[package]] +name = "certifi" +version = "2022.6.15" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "charset-normalizer" +version = "2.1.0" +description = "The Real First Universal Charset Detector. 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= "Shared code for the Cal-ITP data codebases" +authors = ["Andrew Vaccaro "] +license = "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007" + +[tool.poetry.dependencies] +python = "~3.10" +gcsfs = "^2022.5.0" +pandas = "^1.4.3" +pandas-gbq = "^0.17.6" +sqlalchemy-bigquery = "^1.4.4" +google-cloud-bigquery = "^3.2.0" +gtfs-realtime-bindings = "^0.0.7" +siuba = "^0.3.0" +humanize = "^4.2.3" +pendulum = "^2.1.2" +pydantic = "^1.9.1" +Jinja2 = "^3.1.2" + +[tool.poetry.dev-dependencies] +black = "^22.6.0" +pytest = "^7.1.2" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" + [tool.black] line-length = 120 diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index 869b56b..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,105 +0,0 @@ -aiohttp==3.7.4.post0 -appdirs==1.4.4 -appnope==0.1.2 -async-timeout==3.0.1 -attrs==21.2.0 -backcall==0.2.0 -bleach==4.1.0 -cachetools==4.2.2 -certifi==2021.5.30 -cffi==1.14.5 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packages=find_namespace_packages(), - install_requires=[ - "gcsfs", - "pandas", - "pandas-gbq", - "sqlalchemy-bigquery", - "google-cloud-bigquery", - "gtfs-realtime-bindings", - ], - description="", - author="", - author_email="", - url="https://github.com/cal-itp/calitp-py", -) diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/calitp/tests/conftest.py b/tests/conftest.py similarity index 100% rename from calitp/tests/conftest.py rename to tests/conftest.py diff --git a/calitp/tests/helpers.py b/tests/helpers.py similarity index 100% rename from calitp/tests/helpers.py rename to tests/helpers.py diff --git a/calitp/tests/test_sql.py b/tests/test_sql.py similarity index 93% rename from calitp/tests/test_sql.py rename to tests/test_sql.py index be7ce03..ba219ce 100644 --- a/calitp/tests/test_sql.py +++ b/tests/test_sql.py @@ -1,12 +1,13 @@ +import uuid + import pandas as pd import pytest -import uuid +from pandas.testing import assert_frame_equal -from calitp.sql import get_table, write_table, query_sql, get_engine, sql_patch_comments from calitp.config import RequiresAdminWarning, pipeline_context -from calitp.tests.helpers import CI_SCHEMA_NAME +from calitp.sql import get_engine, get_table, query_sql, sql_patch_comments, write_table -from pandas.testing import assert_frame_equal +from .helpers import CI_SCHEMA_NAME # TODO: set up a separate project for CI, so our CI doesn't have permission # to create / delete prod tables. Bigquery lets you set read access on individual @@ -56,10 +57,10 @@ def test_get_table(tmp_name): def test_query_sql(): - import tempfile import datetime - + import tempfile from pathlib import Path + from calitp.templates import user_defined_macros with tempfile.TemporaryDirectory() as dir_name: @@ -80,7 +81,7 @@ def test_query_sql_as_df(): def test_patch_table_comments(tmp_name): - from sqlalchemy import Table, MetaData + from sqlalchemy import MetaData, Table engine = get_engine() diff --git a/calitp/tests/test_storage.py b/tests/test_storage.py similarity index 99% rename from calitp/tests/test_storage.py rename to tests/test_storage.py index 95c5894..ec12e1b 100644 --- a/calitp/tests/test_storage.py +++ b/tests/test_storage.py @@ -1,6 +1,7 @@ -import pytest import uuid +import pytest + from calitp.config import get_bucket from calitp.storage import get_fs diff --git a/calitp/tests/test_tables.py b/tests/test_tables.py similarity index 95% rename from calitp/tests/test_tables.py rename to tests/test_tables.py index 80029eb..7d29538 100644 --- a/calitp/tests/test_tables.py +++ b/tests/test_tables.py @@ -1,13 +1,14 @@ -import pytest import uuid +from contextlib import contextmanager + import pandas as pd +import pytest +from siuba.sql import LazyTbl -from calitp.sql import get_table, write_table, get_engine +from calitp.sql import get_engine, get_table, write_table from calitp.tables import AutoTable -from siuba.sql import LazyTbl -from contextlib import contextmanager -from calitp.tests.helpers import CI_SCHEMA_NAME +from .helpers import CI_SCHEMA_NAME # TODO: copied from tests.sql, consolidate into helpers @@ -33,7 +34,6 @@ def tmp_name(): from sqlalchemy.exc import NoSuchTableError # Code that runs before test ---- - # generate a random table name. ensure it does not start with a number. table_name = "t_" + str(uuid.uuid4()).replace("-", "_") schema_table = f"{CI_SCHEMA_NAME}.{table_name}"