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deploy_pypi.yml
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# The starting point of this script are the links provided on the maturing doc:
# * https://github.com/nanoporetech/fast-ctc-decode/blob/b226ea0f2b2f4f474eff47349703d57d2ea4801b/.github/workflows/publish.yml
# * https://github.com/konstin/complex-manylinux-maturin-docker/blob/main/.github/workflows/build.yml
name: publish-cdshealpix-wheels
# Exec only if a tag starting by 'v' is pushed
# see: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions
on:
push:
tags:
- v*
# Allows to run this workflow manually from the Actions tab
workflow_dispatch:
# Jobs run in parallel, see https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobs
# Github hosted runner are: see https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners
jobs:
# Comming in large parts from @odidev in MOCPy pull request
build-linux32-wheels:
runs-on: ubuntu-latest
env:
MATURIN_USERNAME: ${{ secrets.PYPI_USERNAME_FXP }}
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD_FXP }}
img: quay.io/pypa/manylinux2014_i686
steps:
- name: Checkout
uses: actions/checkout@v4
- name: "Set up QEMU"
id: qemu
uses: docker/setup-qemu-action@v1
- name: Install dependencies
run: |
docker run --rm -v ${{ github.workspace }}:/ws:rw --workdir=/ws \
-e MATURIN_USERNAME=${{ env.MATURIN_USERNAME }} \
-e MATURIN_PASSWORD=${{ env.MATURIN_PASSWORD}} \
${{ env.img }} \
bash -exc 'curl --proto "=https" --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y && \
source $HOME/.cargo/env && \
for PYBIN in /opt/python/cp3{8,9,10,11,12}-*/bin; do
echo "Loop on PYBIN: $PYBIN"
"${PYBIN}/pip" install --upgrade pip
"${PYBIN}/pip" install maturin
"${PYBIN}/maturin" -V
rustc -vV
echo "${PYBIN}/python"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --no-sdist --skip-existing --compatibility manylinux2014 --username "$MATURIN_USERNAME"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --no-sdist --skip-existing --compatibility musllinux_1_2 --username "$MATURIN_USERNAME"
done'
build-aarch64-wheels:
runs-on: ubuntu-latest
env:
MATURIN_USERNAME: ${{ secrets.PYPI_USERNAME_FXP }}
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD_FXP }}
img: quay.io/pypa/manylinux2014_aarch64
steps:
- name: Checkout
uses: actions/checkout@v4
- name: "Set up QEMU"
id: qemu
uses: docker/setup-qemu-action@v1
- name: Install dependencies
run: |
docker run --rm -v ${{ github.workspace }}:/ws:rw --workdir=/ws \
-e MATURIN_USERNAME=${{ env.MATURIN_USERNAME }} \
-e MATURIN_PASSWORD=${{ env.MATURIN_PASSWORD}} \
${{ env.img }} \
bash -exc 'curl --proto "=https" --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- --default-host aarch64-unknown-linux-gnu -y && \
source $HOME/.cargo/env && \
for PYBIN in /opt/python/cp3{8,9,10,11,12}-*/bin; do
echo "Loop on PYBIN: $PYBIN"
"${PYBIN}/pip" install --upgrade pip
"${PYBIN}/pip" install maturin
"${PYBIN}/maturin" -V
rustc -vV
echo "${PYBIN}/python"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --skip-existing --compatibility manylinux2014 --username "$MATURIN_USERNAME" --target aarch64-unknown-linux-gnu --config "net.git-fetch-with-cli = true"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --skip-existing --compatibility musllinux_1_2 --username "$MATURIN_USERNAME" --target aarch64-unknown-linux-gnu --config "net.git-fetch-with-cli = true"
done'
# Comming in large parts from @odidev in MOCPy pull request
build-linux_x86_64-wheels:
runs-on: ubuntu-latest
env:
MATURIN_USERNAME: ${{ secrets.PYPI_USERNAME_FXP }}
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD_FXP }}
img: quay.io/pypa/manylinux2014_x86_64
steps:
- name: Checkout
uses: actions/checkout@v4
- name: "Set up QEMU"
id: qemu
uses: docker/setup-qemu-action@v1
- name: Install dependencies
run: |
docker run --rm -v ${{ github.workspace }}:/ws:rw --workdir=/ws \
-e MATURIN_USERNAME=${{ env.MATURIN_USERNAME }} \
-e MATURIN_PASSWORD=${{ env.MATURIN_PASSWORD}} \
${{ env.img }} \
bash -exc 'curl --proto "=https" --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y && \
source $HOME/.cargo/env && \
for PYBIN in /opt/python/cp3{8,9,10,11,12}-*/bin; do
echo "Loop on PYBIN: $PYBIN"
"${PYBIN}/pip" install --upgrade pip
"${PYBIN}/pip" install maturin
"${PYBIN}/maturin" -V
rustc -vV
echo "${PYBIN}/python"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --skip-existing --compatibility manylinux2014 --username "$MATURIN_USERNAME"
"${PYBIN}/maturin" publish -i "${PYBIN}/python" -v --skip-existing --compatibility musllinux_1_2 --username "$MATURIN_USERNAME"
done'
build-windows-wheels:
runs-on: ${{ matrix.os }}
strategy:
# See https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idstrategyfail-fast
# run all matrix jobs even if on is failling (default behaviour is to stop all jobs)
fail-fast: false
matrix:
os: [windows-latest]
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
steps:
# Checkout the project
- uses: actions/checkout@v4
# Set up python, see https://docs.github.com/en/actions/guides/building-and-testing-python
- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
# For secrets, see https://docs.github.com/en/actions/reference/encrypted-secrets
- name: Build and publish wheel for Python ${{ matrix.python-version }} on ${{ matrix.os }}
# We do not use environement variable for user, because it seems that the way of providing it in the command
# line is not the same for macos and for windows. We should create 2 different actions (see
# https://docs.github.com/en/actions/reference/encrypted-secrets )
env:
MATURIN_USERNAME: ${{ secrets.PYPI_USERNAME_FXP }}
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD_FXP }}
run: |
#python3 -m pip install maturin
pip install --upgrade pip
pip install maturin
#maturin build --release --no-sdist
#maturin publish --no-sdist --skip-existing --username fxpineau
maturin -V
rustc -vV
maturin publish --interpreter python${{matrix.python_version}} --no-sdist --skip-existing --username fxpineau
build-macos-wheels:
runs-on: ${{ matrix.os }}
strategy:
# See https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idstrategyfail-fast
# run all matrix jobs even if on is failling (default behaviour is to stop all jobs)
fail-fast: false
matrix:
os: [macOS-latest]
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
steps:
# Checkout the project
- uses: actions/checkout@v4
# Set up python, see https://docs.github.com/en/actions/guides/building-and-testing-python
- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
# For secrets, see https://docs.github.com/en/actions/reference/encrypted-secrets
- name: Build and publish wheel for Python ${{ matrix.python-version }} on ${{ matrix.os }}
# We do not use environement variable for user, because it seems that the way of providing it in the command
# line is not the same for macos and for windows. We should create 2 different actions (see
# https://docs.github.com/en/actions/reference/encrypted-secrets )
env:
MATURIN_USERNAME: ${{ secrets.PYPI_USERNAME_FXP }}
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD_FXP }}
run: |
#python3 -m pip install maturin
rustup target add aarch64-apple-darwin
rustup target add x86_64-apple-darwin
pip install --upgrade pip
pip install maturin
maturin -V
rustc -vV
echo "${PYBIN}/python"
maturin publish --interpreter python${{matrix.python_version}} --no-sdist --target universal2-apple-darwin --skip-existing --username "$MATURIN_USERNAME"
maturin publish --interpreter python${{matrix.python_version}} --no-sdist --skip-existing --username "$MATURIN_USERNAME"