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Update requirements for obs['sex_ontology_term_id'] #1140

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brianraymor opened this issue Dec 2, 2024 · 3 comments · Fixed by #1145
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Update requirements for obs['sex_ontology_term_id'] #1140

brianraymor opened this issue Dec 2, 2024 · 3 comments · Fixed by #1145
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5.3 Next minor CELLxGENE schema version after 5.2 editorial schema CELLxGENE Discover dataset schema

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brianraymor commented Dec 2, 2024 •
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Context

See sci-data-eng.

Design

Appendix A. Changelog

schema v5.3.0

  • obs (Cell metadata)
    • Updated requirements for sex_ontology_term_id to limit values to female, hermaphrodite, or male

sex_ontology_term_id

Key sex_ontology_term_id
Annotator Curator MUST annotate.
Value categorical with str categories. This MUST be "unknown" if unavailable; otherwise, this MUST be one of:

@brianraymor brianraymor added schema CELLxGENE Discover dataset schema editorial 5.3 Next minor CELLxGENE schema version after 5.2 labels Dec 2, 2024
@brianraymor brianraymor self-assigned this Dec 2, 2024
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@nayib-jose-gloria @jahilton - can you review the design above?

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jahilton commented Dec 3, 2024

lgtm

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LGTM!

@brianraymor brianraymor mentioned this issue Dec 3, 2024
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5.3 Next minor CELLxGENE schema version after 5.2 editorial schema CELLxGENE Discover dataset schema
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updated sex_ontology_term_id brianraymor/single-cell-curation
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@brianraymor @jahilton @nayib-jose-gloria