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cellxgene-schema CLI must validate Drosophila melanogaster #1203

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brianraymor opened this issue Jan 24, 2025 · 0 comments
Open

cellxgene-schema CLI must validate Drosophila melanogaster #1203

brianraymor opened this issue Jan 24, 2025 · 0 comments
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5.3 Next minor CELLxGENE schema version after 5.2 curation software

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@brianraymor
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Please see schema 5.3.0 for full requirements.

schema v5.3.0

  • Required Ontologies
    • Added Drosophila Anatomy Ontology (FBbt) release 2024-12-05
    • Added Drosophila Development Ontology (FBdv) release 2024-12-04
  • Required Gene Annotations
    • Added Drosophila melanogaster BDGP6.46 (GCA_000001215.4) Ensembl 113
  • obs (Cell metadata)
    • Updated the ontology requirements for cell_type_ontology_term_id to include:
      • FBbt for Drosophila melanogaster
    • Updated the ontology requirements for development_stage_ontology_term_id to include:
      • FBdv for Drosophila melanogaster
    • Updated the requirements for organism_ontology_term_id to limit its values to a list of NCBITaxon terms
    • Updated the ontology requirements for tissue_ontology_term_id to include:
      • FBbt for Drosophila melanogaster
  • var and raw.var (Gene Metadata)
    • Updated feature_reference to include:
      • Drosophila melanogaster
@brianraymor brianraymor added 5.3 Next minor CELLxGENE schema version after 5.2 curation software labels Jan 24, 2025
@joyceyan joyceyan self-assigned this Jan 27, 2025
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