From ee78cfef4f09d1eb26492ea3cae5b924f21a1447 Mon Sep 17 00:00:00 2001 From: "Benjamin S. Kirk" Date: Mon, 4 Feb 2013 17:32:41 -0800 Subject: [PATCH] configure test for HDF5 --- Makefile.in | 10 +- aclocal.m4 | 1 + configure | 320 +++++++++++++++++- contrib/Makefile.in | 10 +- contrib/boost/include/Makefile.in | 10 +- .../exodusii/5.22b/exodus/cbind/Makefile.in | 10 +- contrib/exodusii/5.22b/nemesis/Makefile.in | 10 +- contrib/exodusii/Lib/Makefile.in | 10 +- contrib/fparser/Makefile.in | 10 +- contrib/fparser/extrasrc/Makefile.in | 10 +- contrib/gmv/Makefile.in | 10 +- contrib/gzstream/Makefile.in | 10 +- contrib/laspack/Makefile.in | 10 +- contrib/libHilbert/Makefile.in | 10 +- contrib/metis/Makefile.in | 10 +- contrib/nanoflann/Makefile.in | 10 +- contrib/nemesis/Lib/Makefile.in | 10 +- contrib/netcdf/Lib/Makefile.in | 10 +- contrib/parmetis/Makefile.in | 10 +- contrib/sfcurves/Makefile.in | 10 +- contrib/tecplot/tecio/Makefile.in | 10 +- contrib/tetgen/Makefile.in | 10 +- contrib/triangle/Makefile.in | 10 +- examples/Makefile.in | 10 +- .../adaptivity/adaptivity_ex1/Makefile.in | 10 +- .../adaptivity/adaptivity_ex2/Makefile.in | 10 +- .../adaptivity/adaptivity_ex3/Makefile.in | 10 +- .../adaptivity/adaptivity_ex4/Makefile.in | 10 +- .../adaptivity/adaptivity_ex5/Makefile.in | 10 +- examples/adjoints/adjoints_ex1/Makefile.in | 10 +- examples/adjoints/adjoints_ex2/Makefile.in | 10 +- examples/adjoints/adjoints_ex3/Makefile.in | 10 +- examples/adjoints/adjoints_ex4/Makefile.in | 10 +- examples/adjoints/adjoints_ex5/Makefile.in | 10 +- .../eigenproblems_ex1/Makefile.in | 10 +- .../eigenproblems_ex2/Makefile.in | 10 +- .../eigenproblems_ex3/Makefile.in | 10 +- .../fem_system/fem_system_ex1/Makefile.in | 10 +- .../fem_system/fem_system_ex2/Makefile.in | 10 +- .../introduction/introduction_ex1/Makefile.in | 10 +- .../introduction/introduction_ex2/Makefile.in | 10 +- .../introduction/introduction_ex3/Makefile.in | 10 +- .../introduction/introduction_ex4/Makefile.in | 10 +- .../introduction/introduction_ex5/Makefile.in | 10 +- .../miscellaneous_ex1/Makefile.in | 10 +- .../miscellaneous_ex2/Makefile.in | 10 +- .../miscellaneous_ex3/Makefile.in | 10 +- .../miscellaneous_ex4/Makefile.in | 10 +- .../miscellaneous_ex5/Makefile.in | 10 +- .../miscellaneous_ex6/Makefile.in | 10 +- .../miscellaneous_ex7/Makefile.in | 10 +- .../miscellaneous_ex8/Makefile.in | 10 +- .../reduced_basis_ex1/Makefile.in | 10 +- .../reduced_basis_ex2/Makefile.in | 10 +- .../reduced_basis_ex3/Makefile.in | 10 +- .../reduced_basis_ex4/Makefile.in | 10 +- .../reduced_basis_ex5/Makefile.in | 10 +- .../reduced_basis_ex6/Makefile.in | 10 +- .../reduced_basis_ex7/Makefile.in | 10 +- .../solution_transfer_ex1/Makefile.in | 10 +- .../subdomains/subdomains_ex1/Makefile.in | 10 +- .../subdomains/subdomains_ex2/Makefile.in | 10 +- .../systems_of_equations_ex1/Makefile.in | 10 +- .../systems_of_equations_ex2/Makefile.in | 10 +- .../systems_of_equations_ex3/Makefile.in | 10 +- .../systems_of_equations_ex4/Makefile.in | 10 +- .../systems_of_equations_ex5/Makefile.in | 10 +- .../systems_of_equations_ex6/Makefile.in | 10 +- examples/transient/transient_ex1/Makefile.in | 10 +- examples/transient/transient_ex2/Makefile.in | 10 +- examples/vector_fe/vector_fe_ex1/Makefile.in | 10 +- examples/vector_fe/vector_fe_ex2/Makefile.in | 10 +- examples/vector_fe/vector_fe_ex3/Makefile.in | 10 +- include/Makefile.in | 10 +- include/libmesh/Makefile.in | 10 +- include/libmesh_config.h.in | 3 + m4/config_summary.m4 | 1 + m4/hdf5.m4 | 221 ++++++++++++ m4/libmesh_optional_packages.m4 | 11 + m4/netcdf.m4 | 8 +- tests/Makefile.in | 10 +- 81 files changed, 1226 insertions(+), 79 deletions(-) create mode 100644 m4/hdf5.m4 diff --git a/Makefile.in b/Makefile.in index 7d04c02cb9e..ed4f845243a 100644 --- a/Makefile.in +++ b/Makefile.in @@ -110,7 +110,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -3960,6 +3961,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/aclocal.m4 b/aclocal.m4 index 0943f285776..9941cc37001 100644 --- a/aclocal.m4 +++ b/aclocal.m4 @@ -1077,6 +1077,7 @@ m4_include([m4/fparser.m4]) m4_include([m4/glpk.m4]) m4_include([m4/gmv.m4]) m4_include([m4/gz.m4]) +m4_include([m4/hdf5.m4]) m4_include([m4/laspack.m4]) m4_include([m4/libhilbert.m4]) m4_include([m4/libmesh_compiler_features.m4]) diff --git a/configure b/configure index 9864fbc157b..4634aa2b95f 100755 --- a/configure +++ b/configure @@ -697,6 +697,15 @@ LIBMESH_ENABLE_NETCDF_FALSE LIBMESH_ENABLE_NETCDF_TRUE NETCDF_INCLUDE subdirs +LIBMESH_ENABLE_HDF5_FALSE +LIBMESH_ENABLE_HDF5_TRUE +HDF5_PREFIX +HDF5_CXXLIBS +HDF5_FLIBS +HDF5_LIBS +HDF5_CPPFLAGS +HDF5_CFLAGS +HDF5_DIR LIBMESH_ENABLE_GLPK_FALSE LIBMESH_ENABLE_GLPK_TRUE GLPK_LIBRARY @@ -1097,6 +1106,8 @@ with_eigen_include enable_glpk with_glpk_include with_glpk_lib +enable_hdf5 +with_hdf5 enable_netcdf enable_exodus enable_nemesis @@ -1136,6 +1147,7 @@ SLEPC_DIR TRILINOS_DIR VTK_INCLUDE VTK_DIR +HDF5_DIR YACC YFLAGS' ac_subdirs_all='contrib/netcdf/v4' @@ -1841,6 +1853,7 @@ Optional Features: --enable-vtk build with VTK file I/O support --enable-eigen build with Eigen linear algebra support --enable-glpk build with GLPK support + --enable-hdf5 build with HDF5 support --enable-netcdf build with netCDF binary I/O --enable-exodus build with ExodusII API support --enable-nemesis build with NemesisII API support @@ -1905,6 +1918,8 @@ Optional Packages: --with-glpk-include=PATH Specify the path for GLPK header files --with-glpk-lib=PATH Specify the path for GLPK libs + --with-hdf5=DIR root directory of HDF5 installation (default = + HDF5_DIR) --with-fparser= Determine which version of the C++ function parser to use @@ -1942,6 +1957,7 @@ Some influential environment variables: path to Trilinos installation VTK_INCLUDE path to VTK header files VTK_DIR path to VTK installation + HDF5_DIR root directory of HDF5 installation YACC The `Yet Another Compiler Compiler' implementation to use. Defaults to the first program found out of: `bison -y', `byacc', `yacc'. @@ -31674,6 +31690,299 @@ fi +# -------------------------------------------------------------- +# HDF5 -- enabled by default +# -------------------------------------------------------------- + + # Check whether --enable-hdf5 was given. +if test "${enable_hdf5+set}" = set; then : + enableval=$enable_hdf5; case "${enableval}" in + yes) enablehdf5=yes ;; + no) enablehdf5=no ;; + *) as_fn_error $? "bad value ${enableval} for --enable-hdf5" "$LINENO" 5 ;; + esac +else + enablehdf5=$enableoptional +fi + + + + + # The TRIANGLE API is distributed with libmesh, so we don't have to guess + # where it might be installed... + if (test $enablehdf5 = yes); then + + +HAVE_HDF5=0 + + + + +# Check whether --with-hdf5 was given. +if test "${with_hdf5+set}" = set; then : + withval=$with_hdf5; with_hdf5=$withval +if test "${with_hdf5}" != yes; then + HDF5_PREFIX=$withval +fi + +else + +with_hdf5=$withval +if test "x${HDF5_DIR}" != "x"; then + HDF5_PREFIX=${HDF5_DIR} +fi + +fi + + +# package requirement; if not specified, the default is to assume that +# the package is optional + +is_package_required=no + +if test "${with_hdf5}" != no ; then + + if test -d "${HDF5_PREFIX}/lib" ; then + HDF5_LIBS="-L${HDF5_PREFIX}/lib -lhdf5 -Wl,-rpath,${HDF5_PREFIX}/lib" + HDF5_FLIBS="-L${HDF5_PREFIX}/lib -lhdf5_fortran -Wl,-rpath,${HDF5_PREFIX}/lib" + HDF5_CXXLIBS="-L${HDF5_PREFIX}/lib -lhdf5_cpp -Wl,-rpath,${HDF5_PREFIX}/lib" + fi + + if test -d "${HDF5_PREFIX}/include" ; then + HDF5_CFLAGS="-I${HDF5_PREFIX}/include" + fi + + ac_HDF5_save_CFLAGS="$CFLAGS" + ac_HDF5_save_CPPFLAGS="$CPPFLAGS" + ac_HDF5_save_LDFLAGS="$LDFLAGS" + ac_HDF5_save_LIBS="$LIBS" + + CFLAGS="${HDF5_CFLAGS} ${CFLAGS}" + CPPFLAGS="${HDF5_CFLAGS} ${CPPFLAGS}" + LDFLAGS="${HDF5_LIBS} ${LDFLAGS}" + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + ac_fn_c_check_header_mongrel "$LINENO" "hdf5.h" "ac_cv_header_hdf5_h" "$ac_includes_default" +if test "x$ac_cv_header_hdf5_h" = xyes; then : + found_header=yes +else + found_header=no +fi + + + + #----------------------- + # Minimum version check + #---------------------- + + min_hdf5_version=1.8.0 + + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for hdf5 - version >= $min_hdf5_version" >&5 +$as_echo_n "checking for hdf5 - version >= $min_hdf5_version... " >&6; } + + # looking for major.minor.micro style versioning + + MAJOR_VER=`echo $min_hdf5_version | sed 's/^\([0-9]*\).*/\1/'` + if test "x${MAJOR_VER}" = "x" ; then + MAJOR_VER=0 + fi + + MINOR_VER=`echo $min_hdf5_version | sed 's/^\([0-9]*\)\.\{0,1\}\([0-9]*\).*/\2/'` + if test "x${MINOR_VER}" = "x" ; then + MINOR_VER=0 + fi + + MICRO_VER=`echo $min_hdf5_version | sed 's/^\([0-9]*\)\.\{0,1\}\([0-9]*\)\.\{0,1\}\([0-9]*\).*/\3/'` + if test "x${MICRO_VER}" = "x" ; then + MICRO_VER=0 + fi + + # begin additional test(s) if header if available + + succeeded=no + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + if test "x${found_header}" = "xyes" ; then + version_succeeded=no + + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + + #include + +int +main () +{ + + #if H5_VERS_MAJOR > $MAJOR_VER + /* Sweet nibblets */ + #elif (H5_VERS_MAJOR >= $MAJOR_VER) && (H5_VERS_MINOR >= $MINOR_VER) && (H5_VERS_RELEASE >= $MICRO_VER) + /* Winner winner, chicken dinner */ + #else + # error HDF5 version is too old + #endif + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO"; then : + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } + version_succeeded=yes + +else + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + +fi +rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + if test "$version_succeeded" != "yes";then + if test "$is_package_required" = yes; then + as_fn_error $? " + + Your HDF5 library version does not meet the minimum versioning + requirements ($min_hdf5_version). Please use --with-hdf5 to specify the location + of an updated installation or consider upgrading the system version. + + " "$LINENO" 5 + fi + fi + + # Library availability + + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for H5Fopen in -lhdf5" >&5 +$as_echo_n "checking for H5Fopen in -lhdf5... " >&6; } +if ${ac_cv_lib_hdf5_H5Fopen+:} false; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lhdf5 $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char H5Fopen (); +int +main () +{ +return H5Fopen (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_hdf5_H5Fopen=yes +else + ac_cv_lib_hdf5_H5Fopen=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_hdf5_H5Fopen" >&5 +$as_echo "$ac_cv_lib_hdf5_H5Fopen" >&6; } +if test "x$ac_cv_lib_hdf5_H5Fopen" = xyes; then : + found_library=yes +else + found_library=no +fi + + ac_ext=cpp +ac_cpp='$CXXCPP $CPPFLAGS' +ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_cxx_compiler_gnu + + + succeeded=no + if test "$found_header" = yes; then + if test "$version_succeeded" = yes; then + if test "$found_library" = yes; then + succeeded=yes + fi + fi + fi + + fi + CFLAGS="$ac_HDF5_save_CFLAGS" + CPPFLAGS="$ac_HDF5_save_CPPFLAGS" + LDFLAGS="$ac_HDF5_save_LDFLAGS" + LIBS="$ac_HDF5_save_LIBS" + + if test "$succeeded" = no; then + if test "$is_package_required" = yes; then + as_fn_error $? "HDF5 not found. Try either --with-hdf5 or setting HDF5_DIR." "$LINENO" 5 + else + { $as_echo "$as_me:${as_lineno-$LINENO}: optional HDF5 library not found, or does not meet version requirements" >&5 +$as_echo "$as_me: optional HDF5 library not found, or does not meet version requirements" >&6;} + fi + else + HAVE_HDF5=1 + +$as_echo "#define HAVE_HDF5 1" >>confdefs.h + + + + + + + + fi + + #AC_SUBST(HAVE_HDF5) + +fi + +#AM_CONDITIONAL(HDF5_ENABLED,test x$HAVE_HDF5 = x1) + + + if (test "x$HAVE_HDF5" = "x0"); then + enablehdf5=no + else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: <<< Configuring library with HDF5 support >>>" >&5 +$as_echo "<<< Configuring library with HDF5 support >>>" >&6; } + fi + fi + +if (test $enablehdf5 = yes); then + libmesh_optional_INCLUDES="$HDF5_CPPFLAGS $libmesh_optional_INCLUDES" + libmesh_optional_LIBS="$HDF5_LIBS $libmesh_optional_LIBS" +fi + if test x$enablehdf5 = xyes; then + LIBMESH_ENABLE_HDF5_TRUE= + LIBMESH_ENABLE_HDF5_FALSE='#' +else + LIBMESH_ENABLE_HDF5_TRUE='#' + LIBMESH_ENABLE_HDF5_FALSE= +fi + + + # -------------------------------------------------------------- # netCDF -- enabled by default (it is distributed in contrib) # -------------------------------------------------------------- @@ -31718,8 +32027,10 @@ $as_echo "#define HAVE_NETCDF 1" >>confdefs.h as_fn_error $? "NetCDF v4 requres nested subpackages, try --enable-nested" "$LINENO" 5 fi - # pass --disable-netcdf-4 to the subpackage so that we do not require HDF-5 - #libmesh_subpackage_arguments="$libmesh_subpackage_arguments --disable-netcdf-4" + if (test "x$enablehdf5" = "xno"); then + # pass --disable-netcdf-4 to the subpackage so that we do not require HDF-5 + libmesh_subpackage_arguments="$libmesh_subpackage_arguments --disable-netcdf-4" + fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: <<< Configuring library with NetCDF version 4 support >>>" >&5 $as_echo "<<< Configuring library with NetCDF version 4 support >>>" >&6; } @@ -32900,6 +33211,10 @@ if test -z "${LIBMESH_ENABLE_GLPK_TRUE}" && test -z "${LIBMESH_ENABLE_GLPK_FALSE as_fn_error $? "conditional \"LIBMESH_ENABLE_GLPK\" was never defined. Usually this means the macro was only invoked conditionally." "$LINENO" 5 fi +if test -z "${LIBMESH_ENABLE_HDF5_TRUE}" && test -z "${LIBMESH_ENABLE_HDF5_FALSE}"; then + as_fn_error $? "conditional \"LIBMESH_ENABLE_HDF5\" was never defined. +Usually this means the macro was only invoked conditionally." "$LINENO" 5 +fi if test -z "${LIBMESH_ENABLE_NETCDF_TRUE}" && test -z "${LIBMESH_ENABLE_NETCDF_FALSE}"; then as_fn_error $? "conditional \"LIBMESH_ENABLE_NETCDF\" was never defined. Usually this means the macro was only invoked conditionally." "$LINENO" 5 @@ -36385,6 +36700,7 @@ if (test "x$enableoptional" = "xyes"); then echo ' 'glpk............................. : $enableglpk echo ' 'gmv.............................. : $enablegmv echo ' 'gzstream......................... : $enablegz + echo ' 'hdf5............................. : $enablehdf5 echo ' 'laspack.......................... : $enablelaspack echo ' 'libhilbert....................... : $enablelibhilbert echo ' 'metis............................ : $enablemetis diff --git a/contrib/Makefile.in b/contrib/Makefile.in index 4c8cf1d6197..c66960b3ab2 100644 --- a/contrib/Makefile.in +++ b/contrib/Makefile.in @@ -189,7 +189,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -485,6 +486,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/boost/include/Makefile.in b/contrib/boost/include/Makefile.in index 37a29890c1b..97ec6e7bcd0 100644 --- a/contrib/boost/include/Makefile.in +++ b/contrib/boost/include/Makefile.in @@ -70,7 +70,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -491,6 +492,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/exodusii/5.22b/exodus/cbind/Makefile.in b/contrib/exodusii/5.22b/exodus/cbind/Makefile.in index e95a8b7fed9..22afd3ea019 100644 --- a/contrib/exodusii/5.22b/exodus/cbind/Makefile.in +++ b/contrib/exodusii/5.22b/exodus/cbind/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -1853,6 +1854,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/exodusii/5.22b/nemesis/Makefile.in b/contrib/exodusii/5.22b/nemesis/Makefile.in index 36e9b4e4269..99e8ae2624c 100644 --- a/contrib/exodusii/5.22b/nemesis/Makefile.in +++ b/contrib/exodusii/5.22b/nemesis/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -292,6 +293,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/exodusii/Lib/Makefile.in b/contrib/exodusii/Lib/Makefile.in index b5969f207ab..336d641c318 100644 --- a/contrib/exodusii/Lib/Makefile.in +++ b/contrib/exodusii/Lib/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -978,6 +979,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/fparser/Makefile.in b/contrib/fparser/Makefile.in index d9eccfd7d5a..a6d18a6db96 100644 --- a/contrib/fparser/Makefile.in +++ b/contrib/fparser/Makefile.in @@ -84,7 +84,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -428,6 +429,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/fparser/extrasrc/Makefile.in b/contrib/fparser/extrasrc/Makefile.in index 1f710d84911..32d38d28965 100644 --- a/contrib/fparser/extrasrc/Makefile.in +++ b/contrib/fparser/extrasrc/Makefile.in @@ -71,7 +71,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -205,6 +206,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/gmv/Makefile.in b/contrib/gmv/Makefile.in index 2e192280421..c0a1495c0aa 100644 --- a/contrib/gmv/Makefile.in +++ b/contrib/gmv/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -287,6 +288,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/gzstream/Makefile.in b/contrib/gzstream/Makefile.in index 298e00d565a..35471eabc9b 100644 --- a/contrib/gzstream/Makefile.in +++ b/contrib/gzstream/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -309,6 +310,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/laspack/Makefile.in b/contrib/laspack/Makefile.in index b0cc56716bd..ce2b8a32fc0 100644 --- a/contrib/laspack/Makefile.in +++ b/contrib/laspack/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -347,6 +348,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/libHilbert/Makefile.in b/contrib/libHilbert/Makefile.in index 3746366febb..41fe3d5a074 100644 --- a/contrib/libHilbert/Makefile.in +++ b/contrib/libHilbert/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -350,6 +351,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/metis/Makefile.in b/contrib/metis/Makefile.in index a8bb7ced98b..b3835b799f4 100644 --- a/contrib/metis/Makefile.in +++ b/contrib/metis/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -548,6 +549,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/nanoflann/Makefile.in b/contrib/nanoflann/Makefile.in index ec651e4165c..f6b85ac2036 100644 --- a/contrib/nanoflann/Makefile.in +++ b/contrib/nanoflann/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -317,6 +318,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/nemesis/Lib/Makefile.in b/contrib/nemesis/Lib/Makefile.in index 938f343fd22..78517ffe465 100644 --- a/contrib/nemesis/Lib/Makefile.in +++ b/contrib/nemesis/Lib/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -447,6 +448,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/netcdf/Lib/Makefile.in b/contrib/netcdf/Lib/Makefile.in index 28178c93417..3d145282976 100644 --- a/contrib/netcdf/Lib/Makefile.in +++ b/contrib/netcdf/Lib/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -350,6 +351,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/parmetis/Makefile.in b/contrib/parmetis/Makefile.in index 1e87f84bc1d..edb8a86584b 100644 --- a/contrib/parmetis/Makefile.in +++ b/contrib/parmetis/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -438,6 +439,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/sfcurves/Makefile.in b/contrib/sfcurves/Makefile.in index ad0b0dd24d8..3b803e4992d 100644 --- a/contrib/sfcurves/Makefile.in +++ b/contrib/sfcurves/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -297,6 +298,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/tecplot/tecio/Makefile.in b/contrib/tecplot/tecio/Makefile.in index 3ff7313ebb1..4ac8b52ac55 100644 --- a/contrib/tecplot/tecio/Makefile.in +++ b/contrib/tecplot/tecio/Makefile.in @@ -74,7 +74,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -431,6 +432,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/tetgen/Makefile.in b/contrib/tetgen/Makefile.in index 0a206240272..3b3659d3c34 100644 --- a/contrib/tetgen/Makefile.in +++ b/contrib/tetgen/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -317,6 +318,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/contrib/triangle/Makefile.in b/contrib/triangle/Makefile.in index 757c8a93b22..91042c51467 100644 --- a/contrib/triangle/Makefile.in +++ b/contrib/triangle/Makefile.in @@ -75,7 +75,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -317,6 +318,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/Makefile.in b/examples/Makefile.in index 445ad547a55..5fff4a3665e 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -67,7 +67,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -270,6 +271,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adaptivity/adaptivity_ex1/Makefile.in b/examples/adaptivity/adaptivity_ex1/Makefile.in index 811e15c362f..9aa67509dba 100644 --- a/examples/adaptivity/adaptivity_ex1/Makefile.in +++ b/examples/adaptivity/adaptivity_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adaptivity/adaptivity_ex2/Makefile.in b/examples/adaptivity/adaptivity_ex2/Makefile.in index fa99b88d446..ed6b9ce8814 100644 --- a/examples/adaptivity/adaptivity_ex2/Makefile.in +++ b/examples/adaptivity/adaptivity_ex2/Makefile.in @@ -80,7 +80,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -366,6 +367,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adaptivity/adaptivity_ex3/Makefile.in b/examples/adaptivity/adaptivity_ex3/Makefile.in index d81c1fd47cd..1dad9f06bff 100644 --- a/examples/adaptivity/adaptivity_ex3/Makefile.in +++ b/examples/adaptivity/adaptivity_ex3/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -358,6 +359,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adaptivity/adaptivity_ex4/Makefile.in b/examples/adaptivity/adaptivity_ex4/Makefile.in index 4ebe527c51a..1db352dbe91 100644 --- a/examples/adaptivity/adaptivity_ex4/Makefile.in +++ b/examples/adaptivity/adaptivity_ex4/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -357,6 +358,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adaptivity/adaptivity_ex5/Makefile.in b/examples/adaptivity/adaptivity_ex5/Makefile.in index bea9c3e3f3f..ac9505ab6ba 100644 --- a/examples/adaptivity/adaptivity_ex5/Makefile.in +++ b/examples/adaptivity/adaptivity_ex5/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adjoints/adjoints_ex1/Makefile.in b/examples/adjoints/adjoints_ex1/Makefile.in index 39739948f98..1b046a0ab19 100644 --- a/examples/adjoints/adjoints_ex1/Makefile.in +++ b/examples/adjoints/adjoints_ex1/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -416,6 +417,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adjoints/adjoints_ex2/Makefile.in b/examples/adjoints/adjoints_ex2/Makefile.in index 06b2d23a0dc..0149b029efc 100644 --- a/examples/adjoints/adjoints_ex2/Makefile.in +++ b/examples/adjoints/adjoints_ex2/Makefile.in @@ -80,7 +80,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -404,6 +405,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adjoints/adjoints_ex3/Makefile.in b/examples/adjoints/adjoints_ex3/Makefile.in index 05c9814232d..7bf797678a5 100644 --- a/examples/adjoints/adjoints_ex3/Makefile.in +++ b/examples/adjoints/adjoints_ex3/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -416,6 +417,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adjoints/adjoints_ex4/Makefile.in b/examples/adjoints/adjoints_ex4/Makefile.in index cd5e259754d..5d8bb3bcb71 100644 --- a/examples/adjoints/adjoints_ex4/Makefile.in +++ b/examples/adjoints/adjoints_ex4/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -416,6 +417,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/adjoints/adjoints_ex5/Makefile.in b/examples/adjoints/adjoints_ex5/Makefile.in index 2d7d0652cb8..dd43f58d51a 100644 --- a/examples/adjoints/adjoints_ex5/Makefile.in +++ b/examples/adjoints/adjoints_ex5/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -416,6 +417,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/eigenproblems/eigenproblems_ex1/Makefile.in b/examples/eigenproblems/eigenproblems_ex1/Makefile.in index ad063400181..93d8d35c193 100644 --- a/examples/eigenproblems/eigenproblems_ex1/Makefile.in +++ b/examples/eigenproblems/eigenproblems_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/eigenproblems/eigenproblems_ex2/Makefile.in b/examples/eigenproblems/eigenproblems_ex2/Makefile.in index eb6c0ca733e..ec914feeb68 100644 --- a/examples/eigenproblems/eigenproblems_ex2/Makefile.in +++ b/examples/eigenproblems/eigenproblems_ex2/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/eigenproblems/eigenproblems_ex3/Makefile.in b/examples/eigenproblems/eigenproblems_ex3/Makefile.in index dfddcf4dd86..8f521ed4678 100644 --- a/examples/eigenproblems/eigenproblems_ex3/Makefile.in +++ b/examples/eigenproblems/eigenproblems_ex3/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -358,6 +359,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/fem_system/fem_system_ex1/Makefile.in b/examples/fem_system/fem_system_ex1/Makefile.in index acfac00a050..a571eee54ff 100644 --- a/examples/fem_system/fem_system_ex1/Makefile.in +++ b/examples/fem_system/fem_system_ex1/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -381,6 +382,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/fem_system/fem_system_ex2/Makefile.in b/examples/fem_system/fem_system_ex2/Makefile.in index ee9f9fecdff..e6da31d409b 100644 --- a/examples/fem_system/fem_system_ex2/Makefile.in +++ b/examples/fem_system/fem_system_ex2/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -391,6 +392,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/introduction/introduction_ex1/Makefile.in b/examples/introduction/introduction_ex1/Makefile.in index e3550057506..319eb3cc2f7 100644 --- a/examples/introduction/introduction_ex1/Makefile.in +++ b/examples/introduction/introduction_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/introduction/introduction_ex2/Makefile.in b/examples/introduction/introduction_ex2/Makefile.in index 5b5b984d161..920793d199a 100644 --- a/examples/introduction/introduction_ex2/Makefile.in +++ b/examples/introduction/introduction_ex2/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/introduction/introduction_ex3/Makefile.in b/examples/introduction/introduction_ex3/Makefile.in index ecc63a7c921..1e796b080a4 100644 --- a/examples/introduction/introduction_ex3/Makefile.in +++ b/examples/introduction/introduction_ex3/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/introduction/introduction_ex4/Makefile.in b/examples/introduction/introduction_ex4/Makefile.in index 0b98d16ee2e..7a1ec37060f 100644 --- a/examples/introduction/introduction_ex4/Makefile.in +++ b/examples/introduction/introduction_ex4/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/introduction/introduction_ex5/Makefile.in b/examples/introduction/introduction_ex5/Makefile.in index a5da6eca089..9ca31a08657 100644 --- a/examples/introduction/introduction_ex5/Makefile.in +++ b/examples/introduction/introduction_ex5/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex1/Makefile.in b/examples/miscellaneous/miscellaneous_ex1/Makefile.in index 7e654f59eef..30dcc60fd55 100644 --- a/examples/miscellaneous/miscellaneous_ex1/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex2/Makefile.in b/examples/miscellaneous/miscellaneous_ex2/Makefile.in index e31fe80826e..d187b50e74d 100644 --- a/examples/miscellaneous/miscellaneous_ex2/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex2/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -357,6 +358,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex3/Makefile.in b/examples/miscellaneous/miscellaneous_ex3/Makefile.in index e8fbca361a0..69eec926456 100644 --- a/examples/miscellaneous/miscellaneous_ex3/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex3/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -357,6 +358,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex4/Makefile.in b/examples/miscellaneous/miscellaneous_ex4/Makefile.in index 9c6ceeb5cb9..733eb83a121 100644 --- a/examples/miscellaneous/miscellaneous_ex4/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex4/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex5/Makefile.in b/examples/miscellaneous/miscellaneous_ex5/Makefile.in index 7780b015f4f..1e13f212414 100644 --- a/examples/miscellaneous/miscellaneous_ex5/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex5/Makefile.in @@ -80,7 +80,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -366,6 +367,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex6/Makefile.in b/examples/miscellaneous/miscellaneous_ex6/Makefile.in index 4686e36ff40..7f3ac50efa3 100644 --- a/examples/miscellaneous/miscellaneous_ex6/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex6/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex7/Makefile.in b/examples/miscellaneous/miscellaneous_ex7/Makefile.in index ec482e02bc3..b6103944d14 100644 --- a/examples/miscellaneous/miscellaneous_ex7/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex7/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -385,6 +386,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/miscellaneous/miscellaneous_ex8/Makefile.in b/examples/miscellaneous/miscellaneous_ex8/Makefile.in index 49b34ef5aa6..3f1bb0400c6 100644 --- a/examples/miscellaneous/miscellaneous_ex8/Makefile.in +++ b/examples/miscellaneous/miscellaneous_ex8/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -381,6 +382,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex1/Makefile.in b/examples/reduced_basis/reduced_basis_ex1/Makefile.in index a696c34be0f..f7cf904c175 100644 --- a/examples/reduced_basis/reduced_basis_ex1/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex1/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -376,6 +377,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex2/Makefile.in b/examples/reduced_basis/reduced_basis_ex2/Makefile.in index baa5141ebd2..258bff54ec3 100644 --- a/examples/reduced_basis/reduced_basis_ex2/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex2/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -376,6 +377,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex3/Makefile.in b/examples/reduced_basis/reduced_basis_ex3/Makefile.in index ba7c4fd0bde..0da85f930f7 100644 --- a/examples/reduced_basis/reduced_basis_ex3/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex3/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -376,6 +377,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex4/Makefile.in b/examples/reduced_basis/reduced_basis_ex4/Makefile.in index ee157bc21e6..f47a235a575 100644 --- a/examples/reduced_basis/reduced_basis_ex4/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex4/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -381,6 +382,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex5/Makefile.in b/examples/reduced_basis/reduced_basis_ex5/Makefile.in index bf6a20d8461..05ff6f66142 100644 --- a/examples/reduced_basis/reduced_basis_ex5/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex5/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -381,6 +382,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex6/Makefile.in b/examples/reduced_basis/reduced_basis_ex6/Makefile.in index 847aa496cb6..6a0c9624ac4 100644 --- a/examples/reduced_basis/reduced_basis_ex6/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex6/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -381,6 +382,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/reduced_basis/reduced_basis_ex7/Makefile.in b/examples/reduced_basis/reduced_basis_ex7/Makefile.in index d44d86f2f64..2b6987c2704 100644 --- a/examples/reduced_basis/reduced_basis_ex7/Makefile.in +++ b/examples/reduced_basis/reduced_basis_ex7/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -376,6 +377,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/solution_transfer/solution_transfer_ex1/Makefile.in b/examples/solution_transfer/solution_transfer_ex1/Makefile.in index 668f5c73399..f6c4f099816 100644 --- a/examples/solution_transfer/solution_transfer_ex1/Makefile.in +++ b/examples/solution_transfer/solution_transfer_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/subdomains/subdomains_ex1/Makefile.in b/examples/subdomains/subdomains_ex1/Makefile.in index dfeaf0d489a..a0fc6660f5a 100644 --- a/examples/subdomains/subdomains_ex1/Makefile.in +++ b/examples/subdomains/subdomains_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/subdomains/subdomains_ex2/Makefile.in b/examples/subdomains/subdomains_ex2/Makefile.in index 1961e621023..37dc27deb28 100644 --- a/examples/subdomains/subdomains_ex2/Makefile.in +++ b/examples/subdomains/subdomains_ex2/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex1/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex1/Makefile.in index ae85ce22a25..be37e758b09 100644 --- a/examples/systems_of_equations/systems_of_equations_ex1/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex2/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex2/Makefile.in index f70ba3420a9..68feed97135 100644 --- a/examples/systems_of_equations/systems_of_equations_ex2/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex2/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -357,6 +358,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex3/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex3/Makefile.in index eebc5f1a147..9fe9cdeacc1 100644 --- a/examples/systems_of_equations/systems_of_equations_ex3/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex3/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex4/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex4/Makefile.in index 008428ef732..8a5b2723387 100644 --- a/examples/systems_of_equations/systems_of_equations_ex4/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex4/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex5/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex5/Makefile.in index d337bbf0aa5..1b27841e074 100644 --- a/examples/systems_of_equations/systems_of_equations_ex5/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex5/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/systems_of_equations/systems_of_equations_ex6/Makefile.in b/examples/systems_of_equations/systems_of_equations_ex6/Makefile.in index 975fa96cb2b..4bec24ffa91 100644 --- a/examples/systems_of_equations/systems_of_equations_ex6/Makefile.in +++ b/examples/systems_of_equations/systems_of_equations_ex6/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -352,6 +353,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/transient/transient_ex1/Makefile.in b/examples/transient/transient_ex1/Makefile.in index 84c7a8cdfb4..fa2d39828d0 100644 --- a/examples/transient/transient_ex1/Makefile.in +++ b/examples/transient/transient_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -362,6 +363,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/transient/transient_ex2/Makefile.in b/examples/transient/transient_ex2/Makefile.in index ebf91b2631d..86ba986b8b9 100644 --- a/examples/transient/transient_ex2/Makefile.in +++ b/examples/transient/transient_ex2/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -353,6 +354,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/vector_fe/vector_fe_ex1/Makefile.in b/examples/vector_fe/vector_fe_ex1/Makefile.in index 41a1b8247a4..ce25116c11f 100644 --- a/examples/vector_fe/vector_fe_ex1/Makefile.in +++ b/examples/vector_fe/vector_fe_ex1/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -360,6 +361,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/vector_fe/vector_fe_ex2/Makefile.in b/examples/vector_fe/vector_fe_ex2/Makefile.in index 8b1340e617b..79ff6849393 100644 --- a/examples/vector_fe/vector_fe_ex2/Makefile.in +++ b/examples/vector_fe/vector_fe_ex2/Makefile.in @@ -77,7 +77,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -386,6 +387,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/examples/vector_fe/vector_fe_ex3/Makefile.in b/examples/vector_fe/vector_fe_ex3/Makefile.in index ac6764c8170..09b5d1f1be3 100644 --- a/examples/vector_fe/vector_fe_ex3/Makefile.in +++ b/examples/vector_fe/vector_fe_ex3/Makefile.in @@ -78,7 +78,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -387,6 +388,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/include/Makefile.in b/include/Makefile.in index 19e238d026c..a4efbba6f43 100644 --- a/include/Makefile.in +++ b/include/Makefile.in @@ -71,7 +71,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -274,6 +275,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/include/libmesh/Makefile.in b/include/libmesh/Makefile.in index 9ac8a3fdece..bb8c4154c60 100644 --- a/include/libmesh/Makefile.in +++ b/include/libmesh/Makefile.in @@ -83,7 +83,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -217,6 +218,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ diff --git a/include/libmesh_config.h.in b/include/libmesh_config.h.in index 59302501d78..9f1d9c12b9e 100644 --- a/include/libmesh_config.h.in +++ b/include/libmesh_config.h.in @@ -222,6 +222,9 @@ /* define if the compiler supports std::hash_set */ #undef HAVE_HASH_SET +/* Define if HDF5 is available */ +#undef HAVE_HDF5 + /* Define to 1 if you have the header file. */ #undef HAVE_INTTYPES_H diff --git a/m4/config_summary.m4 b/m4/config_summary.m4 index 8874754dfa0..897427d0eab 100644 --- a/m4/config_summary.m4 +++ b/m4/config_summary.m4 @@ -120,6 +120,7 @@ if (test "x$enableoptional" = "xyes"); then echo ' 'glpk............................. : $enableglpk echo ' 'gmv.............................. : $enablegmv echo ' 'gzstream......................... : $enablegz + echo ' 'hdf5............................. : $enablehdf5 echo ' 'laspack.......................... : $enablelaspack echo ' 'libhilbert....................... : $enablelibhilbert echo ' 'metis............................ : $enablemetis diff --git a/m4/hdf5.m4 b/m4/hdf5.m4 new file mode 100644 index 00000000000..d6d53782a82 --- /dev/null +++ b/m4/hdf5.m4 @@ -0,0 +1,221 @@ +# ------------------------------------------------------------- +# Hdf5 library +# ------------------------------------------------------------- +AC_DEFUN([CONFIGURE_HDF5], +[ + AC_ARG_ENABLE(hdf5, + AC_HELP_STRING([--enable-hdf5], + [build with HDF5 support]), + [case "${enableval}" in + yes) enablehdf5=yes ;; + no) enablehdf5=no ;; + *) AC_MSG_ERROR(bad value ${enableval} for --enable-hdf5) ;; + esac], + [enablehdf5=$enableoptional]) + + + + # The TRIANGLE API is distributed with libmesh, so we don't have to guess + # where it might be installed... + if (test $enablehdf5 = yes); then + AX_PATH_HDF5(1.8.0,no) + if (test "x$HAVE_HDF5" = "x0"); then + enablehdf5=no + else + AC_MSG_RESULT(<<< Configuring library with HDF5 support >>>) + fi + fi +]) + + + + +# SYNOPSIS +# +# Test for HDF5 +# +# AX_PATH_HDF5( , ) +# +# DESCRIPTION +# +# Provides a --with-hdf5=DIR option and minimum version check for +# the HDF I/O library. Searches --with-hdf5, $HDF5_DIR, and the +# usual places for HDF5 headers and libraries. +# +# On success, sets HDF5_CFLAGS, HDF5_LIBS, and #defines HAVE_HDF5. +# Assumes package is optional unless overridden with $2=yes. +# +# LAST MODIFICATION +# +# $Id: hdf5_new.m4 31520 2012-06-28 14:53:30Z mpanesi $ +# +# COPYLEFT +# +# Copyright (c) 2010 Karl W. Schulz +# Copyright (c) 2009 Rhys Ulerich +# Copyright (c) 2008 Thomas Porschberg +# Copyright (c) 2008 Caolan McNamara +# Copyright (c) 2008 Alexandre Duret-Lutz +# Copyright (c) 2008 Matthew Mueller +# +# Copying and distribution of this file, with or without modification, are +# permitted in any medium without royalty provided the copyright notice +# and this notice are preserved. + +AC_DEFUN([AX_PATH_HDF5], +[ + +HAVE_HDF5=0 + +AC_ARG_VAR(HDF5_DIR,[root directory of HDF5 installation]) + +AC_ARG_WITH(hdf5, + [AS_HELP_STRING([--with-hdf5[=DIR]],[root directory of HDF5 installation (default = HDF5_DIR)])], + [with_hdf5=$withval +if test "${with_hdf5}" != yes; then + HDF5_PREFIX=$withval +fi +],[ +with_hdf5=$withval +if test "x${HDF5_DIR}" != "x"; then + HDF5_PREFIX=${HDF5_DIR} +fi +]) + +# package requirement; if not specified, the default is to assume that +# the package is optional + +is_package_required=ifelse([$2], ,no, $2 ) + +if test "${with_hdf5}" != no ; then + + if test -d "${HDF5_PREFIX}/lib" ; then + HDF5_LIBS="-L${HDF5_PREFIX}/lib -lhdf5 -Wl,-rpath,${HDF5_PREFIX}/lib" + HDF5_FLIBS="-L${HDF5_PREFIX}/lib -lhdf5_fortran -Wl,-rpath,${HDF5_PREFIX}/lib" + HDF5_CXXLIBS="-L${HDF5_PREFIX}/lib -lhdf5_cpp -Wl,-rpath,${HDF5_PREFIX}/lib" + fi + + if test -d "${HDF5_PREFIX}/include" ; then + HDF5_CFLAGS="-I${HDF5_PREFIX}/include" + fi + + ac_HDF5_save_CFLAGS="$CFLAGS" + ac_HDF5_save_CPPFLAGS="$CPPFLAGS" + ac_HDF5_save_LDFLAGS="$LDFLAGS" + ac_HDF5_save_LIBS="$LIBS" + + CFLAGS="${HDF5_CFLAGS} ${CFLAGS}" + CPPFLAGS="${HDF5_CFLAGS} ${CPPFLAGS}" + LDFLAGS="${HDF5_LIBS} ${LDFLAGS}" + AC_LANG_PUSH([C]) + AC_CHECK_HEADER([hdf5.h],[found_header=yes],[found_header=no]) + + #----------------------- + # Minimum version check + #---------------------- + + min_hdf5_version=ifelse([$1], ,1.8.0, $1) + + AC_MSG_CHECKING(for hdf5 - version >= $min_hdf5_version) + + # looking for major.minor.micro style versioning + + MAJOR_VER=`echo $min_hdf5_version | sed 's/^\([[0-9]]*\).*/\1/'` + if test "x${MAJOR_VER}" = "x" ; then + MAJOR_VER=0 + fi + + MINOR_VER=`echo $min_hdf5_version | sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\2/'` + if test "x${MINOR_VER}" = "x" ; then + MINOR_VER=0 + fi + + MICRO_VER=`echo $min_hdf5_version | sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\3/'` + if test "x${MICRO_VER}" = "x" ; then + MICRO_VER=0 + fi + + # begin additional test(s) if header if available + + succeeded=no + AC_LANG_PUSH([C]) + + if test "x${found_header}" = "xyes" ; then + version_succeeded=no + + AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[ + @%:@include + ]], [[ + #if H5_VERS_MAJOR > $MAJOR_VER + /* Sweet nibblets */ + #elif (H5_VERS_MAJOR >= $MAJOR_VER) && (H5_VERS_MINOR >= $MINOR_VER) && (H5_VERS_RELEASE >= $MICRO_VER) + /* Winner winner, chicken dinner */ + #else + # error HDF5 version is too old + #endif + ]])],[ + AC_MSG_RESULT(yes) + version_succeeded=yes + ],[ + AC_MSG_RESULT(no) + ]) + + AC_LANG_POP([C]) + + if test "$version_succeeded" != "yes";then + if test "$is_package_required" = yes; then + AC_MSG_ERROR([ + + Your HDF5 library version does not meet the minimum versioning + requirements ($min_hdf5_version). Please use --with-hdf5 to specify the location + of an updated installation or consider upgrading the system version. + + ]) + fi + fi + + # Library availability + + AC_CHECK_LIB([hdf5],[H5Fopen],[found_library=yes],[found_library=no]) + AC_LANG_POP([C]) + + succeeded=no + if test "$found_header" = yes; then + if test "$version_succeeded" = yes; then + if test "$found_library" = yes; then + succeeded=yes + fi + fi + fi + + fi dnl end test if header if available + + CFLAGS="$ac_HDF5_save_CFLAGS" + CPPFLAGS="$ac_HDF5_save_CPPFLAGS" + LDFLAGS="$ac_HDF5_save_LDFLAGS" + LIBS="$ac_HDF5_save_LIBS" + + if test "$succeeded" = no; then + if test "$is_package_required" = yes; then + AC_MSG_ERROR([HDF5 not found. Try either --with-hdf5 or setting HDF5_DIR.]) + else + AC_MSG_NOTICE([optional HDF5 library not found, or does not meet version requirements]) + fi + else + HAVE_HDF5=1 + AC_DEFINE(HAVE_HDF5,1,[Define if HDF5 is available]) + AC_SUBST(HDF5_CFLAGS) + AC_SUBST(HDF5_CPPFLAGS) + AC_SUBST(HDF5_LIBS) + AC_SUBST(HDF5_FLIBS) + AC_SUBST(HDF5_CXXLIBS) + AC_SUBST(HDF5_PREFIX) + fi + + #AC_SUBST(HAVE_HDF5) + +fi + +#AM_CONDITIONAL(HDF5_ENABLED,test x$HAVE_HDF5 = x1) + +]) diff --git a/m4/libmesh_optional_packages.m4 b/m4/libmesh_optional_packages.m4 index 9d825a7e240..5365ce23ddd 100644 --- a/m4/libmesh_optional_packages.m4 +++ b/m4/libmesh_optional_packages.m4 @@ -376,6 +376,17 @@ AM_CONDITIONAL(LIBMESH_ENABLE_GLPK, test x$enableglpk = xyes) +# -------------------------------------------------------------- +# HDF5 -- enabled by default +# -------------------------------------------------------------- +CONFIGURE_HDF5 +if (test $enablehdf5 = yes); then + libmesh_optional_INCLUDES="$HDF5_CPPFLAGS $libmesh_optional_INCLUDES" + libmesh_optional_LIBS="$HDF5_LIBS $libmesh_optional_LIBS" +fi +AM_CONDITIONAL(LIBMESH_ENABLE_HDF5, test x$enablehdf5 = xyes) + + # -------------------------------------------------------------- # netCDF -- enabled by default (it is distributed in contrib) # -------------------------------------------------------------- diff --git a/m4/netcdf.m4 b/m4/netcdf.m4 index 738959256c6..1c55b615e05 100644 --- a/m4/netcdf.m4 +++ b/m4/netcdf.m4 @@ -36,9 +36,11 @@ AC_DEFUN([CONFIGURE_NETCDF], AC_MSG_ERROR([NetCDF v4 requres nested subpackages, try --enable-nested]) fi - # pass --disable-netcdf-4 to the subpackage so that we do not require HDF-5 - #libmesh_subpackage_arguments="$libmesh_subpackage_arguments --disable-netcdf-4" - + if (test "x$enablehdf5" = "xno"); then + # pass --disable-netcdf-4 to the subpackage so that we do not require HDF-5 + libmesh_subpackage_arguments="$libmesh_subpackage_arguments --disable-netcdf-4" + fi + AC_MSG_RESULT(<<< Configuring library with NetCDF version 4 support >>>) ;; diff --git a/tests/Makefile.in b/tests/Makefile.in index 7cdc1b1bb0d..e58957afc52 100644 --- a/tests/Makefile.in +++ b/tests/Makefile.in @@ -76,7 +76,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/ac_cxx_rtti.m4 \ $(top_srcdir)/m4/exodus.m4 $(top_srcdir)/m4/feexcept.m4 \ $(top_srcdir)/m4/fparser.m4 $(top_srcdir)/m4/glpk.m4 \ $(top_srcdir)/m4/gmv.m4 $(top_srcdir)/m4/gz.m4 \ - $(top_srcdir)/m4/laspack.m4 $(top_srcdir)/m4/libhilbert.m4 \ + $(top_srcdir)/m4/hdf5.m4 $(top_srcdir)/m4/laspack.m4 \ + $(top_srcdir)/m4/libhilbert.m4 \ $(top_srcdir)/m4/libmesh_compiler_features.m4 \ $(top_srcdir)/m4/libmesh_core_features.m4 \ $(top_srcdir)/m4/libmesh_method.m4 \ @@ -416,6 +417,13 @@ GZSTREAM_INCLUDE = @GZSTREAM_INCLUDE@ GZSTREAM_LIB = @GZSTREAM_LIB@ HAVE_DOT = @HAVE_DOT@ HAVE_GCOV_TOOLS = @HAVE_GCOV_TOOLS@ +HDF5_CFLAGS = @HDF5_CFLAGS@ +HDF5_CPPFLAGS = @HDF5_CPPFLAGS@ +HDF5_CXXLIBS = @HDF5_CXXLIBS@ +HDF5_DIR = @HDF5_DIR@ +HDF5_FLIBS = @HDF5_FLIBS@ +HDF5_LIBS = @HDF5_LIBS@ +HDF5_PREFIX = @HDF5_PREFIX@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@