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<!doctype html>
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<title>EMODnet Biology: Plankton products</title>
<meta name="description" content="Spatial data interpolation">
<meta name="author" content="Charles">
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</head>
<body>
<div class="reveal">
<div class="slides">
<section>
<section class="center">
<h1>A Showcase for the European Atlas of Marine Life </h1>
<h2>Plankton gridded products</h2>
<p>
<img src="images/logo_gher.png" height="75px"/>
<img src="images/logo_uliege.jpeg" height="75px"/>
<img src="images/logo_emodnet.png" height="75px"/>
<img src="images/logo_seadatacloud.png" height="75px"/></p>
</section>
<section class="center" style="text-align: left;">
<h2> A work by</h2>
<p>Olivier <font style="font-variant: small-caps">Beauchard</font> (data preparation and processing)</p>
<p>Alexander <font style="font-variant: small-caps">Barth</font> (code development and data interpolation)</p>
<p>Peter <font style="font-variant: small-caps">Herman</font> (data preparation and interpretation)</p>
<p>Jean-Marie <font style="font-variant: small-caps">Beckers</font> (code development)</p>
<p>Charles <font style="font-variant: small-caps">Troupin</font> (data interpolation and visualisation)</p>
<p>
<img src="images/olivier-beauchard.jpg" height="150px"/>
<img src="images/alexander-barth.jpeg" height="150px"/>
<img src="images/EMODnet-Bio/peter_herman.jpg" height="150px"/>
<img src="images/jeanmarie-beckers.jpeg" height="150px"/>
<img src="images/ctroupin.JPG" height="150px"/></p>
</section>
<section class="center">
<h2>
<p>Collect once,</p>
<p class="fragment fade-up">Use many times</p>
<p class="fragment fade-up">And create products with DIVA</p>
</h2>
</section>
</section>
</section>
<section>
<section class="center">
<h1>1. How do we perform interpolation?</h1>
</section>
<section data-state="emodnet-bio-map">
<h2>Data interpolation</h2>
<div style="text-align:left" id="emodnet-bio-map" class="map"></div>
</section>
<section class="center" data-background-image="images/EMODnet-Bio/divand-github.png">
<a href="https://github.com/gher-ulg/DIVAnd.jl/">https://github.com/gher-ulg/DIVAnd.jl/</a>
</section>
</section>
<section>
<section class="center">
<h1>2. Example of products</h1>
</section>
<section class="center" data-background-image="images/EMODnet-Bio/backgrounbenthos_2.png">
<h2>
Benthic macroinvertebrate<br> living modes<br> in European seas
<h2>
</section>
<section>
<h2>Data sources</h2>
<p style="text-align:left">Available from EMODnet Biology (see list on the web)</p>
<p style="text-align:left">3 main living modes</p>
<img src="images/EMODnet-Bio/databenthos.png" width="45%">
</section>
<section>
<h3>Resistant</h3>
<img src="images/EMODnet-Bio/Urothoe_poseidonis-300x225.jpg"/>
<br>
<ol>
<li>strong mobility</li>
<li>short life cycle</li>
<li>high offspring survival probability</li>
</ol>
</section>
<section>
<h3>Opportunistic/resilient</h3>
<img src="images/EMODnet-Bio/Spiophanes_bombyx-300x225.jpg"/>
<br>
<ol>
<li>Relatively short life span</li>
<li>Not very habitat-specific</li>
</ol>
</section>
<section>
<h3>Vulnerable</h3>
<img src="images/EMODnet-Bio/Arctica_islandica-300x234.jpg"/>
<br>
<ol>
<li> Years/decades to achieve a minimum of reproductive success
<li> Negatively affected by bottom trawling
</ol>
</section>
<section>
<h3>Data location</h3>
<img src="images/EMODnet-Bio/Benthos_Total_densities_ab_data.png"/>
</section>
<section>
<h3>Interpolated fields (relative)</h3>
<img src="images/EMODnet-Bio/Benthos_Total_densities_ab.png"/>
</section>
<section>
<h3>Error fields</h3>
<img src="images/EMODnet-Bio/Benthos_Total_densities_ab_error.png"/>
</section>
<section class="center">
<h2>Neural network modelling<br> of Baltic zooplankton abundances</h2>
</section>
<section>
<h3>Method: neural network</h3>
<p style="text-align:left">Using <i>co-variables</i> to help for the interpolation</p>
<p style="text-align:left">Main datasets: Zooplankton observations in the Baltic</p>
<ol>
<li> the Swedish <a href="http://www.emodnet-biology.eu/data-catalog?module=dataset&dasid=2452">SHARK database</a> from EMODnet Biology</li>
<li> the Finnish data from the <a href="http://www.emodnet-biology.eu/data-catalog?module=dataset&dasid=5726">NOAA Copepod database</a> </li>
<li> the German and Polish from the <a href="http://www.emodnet-biology.eu/data-catalog?module=dataset&dasid=4431">HELCOM DOME database</a></li>
</ol>
</section>
<section>
<h3>Co-variables</h3>
<ol><li><a href="http://www.emodnet-chemistry.eu/products/catalogue#/metadata/087a72c0-c243-11e8-bac2-5ce0c5469bc7">Dissolved oxygen</a> (from EMODnet Chemistry)</li>
<li><a href="https://www.seadatanet.org/Products#/metadata/bf35a7c5-c843-4a23-8040-07ddcf3d8e71">Salinity</a> (from SeaDataNet)</li>
<li><a href="https://www.seadatanet.org/Products#/metadata/bf35a7c5-c843-4a23-8040-07ddcf3d8e71">Temperature</a> (from SeaDataNet)</li>
<li><a href="https://oceancolor.gsfc.nasa.gov/l3/">Chlorophyll concentration</a> (MODIS-Aqua from NASA)</li>
<li><a href="https://www.gebco.net/">Bathymetry</a> (from GEBCO)</li>
<li><a href="https://gcmd.nasa.gov/KeywordSearch/Metadata.do?Portal=idn_ceos&KeywordPath=%5BData_Center%3A+Short_Name%3D%27PacIOOS%27%5D&OrigMetadataNode=GCMD&EntryId=dist2coast_1deg&MetadataView=Full&MetadataType=0&lbnode=mdlb1">Distance from coast </a>(from GSFC, NASA)</li>
</ol>
</section>
<section class="center" data-transition="fade-in slide-out">
<h3>Examples of fields</h3>
<img src="images/EMODnet-Bio/Keratella cochlearis-2007.png">
</section>
<section class="center" data-transition="fade-in slide-out">
<h3>Examples of fields</h3>
<img src="images/EMODnet-Bio/Keratella cochlearis-2008.png">
</section>
<section class="center" data-transition="fade-in slide-out">
<h3>Examples of fields</h3>
<img src="images/EMODnet-Bio/Keratella cochlearis-2010.png">
</section>
</section>
<section>
<section class="center", data-background="images/EMODnet-Bio/parenthesis.jpg">
<p style="font-size:70px">3.</p><br>
<p style="font-size:50px" class="fragment"><b>F</b>indability</p>
<p style="font-size:50px" class="fragment"><b>A</b>ccessibility</p>
<p style="font-size:50px" class="fragment"><b>I</b>nteroperability</p>
<p style="font-size:50px" class="fragment"><b>R</b>eusability</p>
</section>
<section>
<h2>Towards reproducibility</h2>
<p style="text-align:left" class="fragment grow"><i class="fas fa-check"></i> Data <i class="fas fa-arrow-right"></i> <a href="http://www.emodnet-biology.eu">EMODnet Biology</a></p>
<p style="text-align:left" class="fragment grow"><i class="fas fa-check"></i> Tool <i class="fas fa-arrow-right"></i> DIVAnd v2.1.1: <a href="http://doi.org/10.5281/zenodo.1407912">http://doi.org/10.5281/zenodo.1407912</a> </p>
<p style="text-align:left" class="fragment grow"><i class="fas fa-check"></i> Code and procedure <i class="fas fa-arrow-right"></i> Jupyter-notebooks: <a href="https://github.com/EMODnet/EMODnet-Biology-fish-benthos-traits"><i class="fab fa-github"></i></a></p>
<p style="text-align:left" class="fragment grow"><i class="fas fa-check"></i> Products available for download <i class="fas fa-arrow-right"></i> netCDF files:<br> <a href="https://dox.ulg.ac.be/index.php/s/EvIwSvTwhtJ6Tmu">https://dox.ulg.ac.be/index.php/s/EvIwSvTwhtJ6Tmu</a></p>
</section>
</section>
<section>
<section class="center" data-background="images/EMODnet-Bio/Lisboa2015_9054.jpg">
<h1 style="color:white;"> Thanks for<br> your attention </h1>
</section>
</section>
</div>
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