diff --git a/docs/usage.md b/docs/usage.md index c054ec8..4c06784 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -138,12 +138,15 @@ Caused by: Process `EURYALE:ALIGNMENT:DIAMOND_BLASTX (WT_REP1)` terminated with an error exit status (137) Command executed: - STAR \ - --genomeDir star \ - --readFilesIn WT_REP1_trimmed.fq.gz \ - --runThreadN 2 \ - --outFileNamePrefix WT_REP1. \ - + diamond \ + blastx \ + --threads 2 \ + --db $DB \ + --query test_minigut_sample2.fasta \ + --outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore \ + --more-sensitive --top 3 --compress 1 \ + --out test_minigut_sample2.txt \ + --log Command exit status: 137