From ac25e5537dcb2428127123ea4fe106d8821bdde8 Mon Sep 17 00:00:00 2001
From: jvfe <jvfecav@gmail.com>
Date: Fri, 22 Nov 2024 07:15:20 -0300
Subject: [PATCH] docs: Fix text in methods descrip

---
 assets/methods_description_template.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/assets/methods_description_template.yml b/assets/methods_description_template.yml
index a7b58cc..97e467d 100644
--- a/assets/methods_description_template.yml
+++ b/assets/methods_description_template.yml
@@ -3,15 +3,15 @@ description: "Suggested text and references to use when describing pipeline usag
 section_name: "dalmolingroup/euryale Methods Description"
 section_href: "https://github.com/dalmolingroup/euryale"
 plot_type: "html"
-## TODO nf-core: Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
 ## You inject any metadata in the Nextflow '${workflow}' object
 data: |
   <h4>Methods</h4>
-  <p>Data was processed using dalmolingroup/euryale v${workflow.manifest.version} ${doi_text} of the nf-core collection of workflows (<a href="https://doi.org/10.1038/s41587-020-0439-x">Ewels <em>et al.</em>, 2020</a>).</p>
+  <p>Data was processed using dalmolingroup/euryale v${workflow.manifest.version} ${doi_text}</p>
   <p>The pipeline was executed with Nextflow v${workflow.nextflow.version} (<a href="https://doi.org/10.1038/nbt.3820">Di Tommaso <em>et al.</em>, 2017</a>) with the following command:</p>
   <pre><code>${workflow.commandLine}</code></pre>
   <h4>References</h4>
   <ul>
+    <li>J. V. F. Cavalcante, I. Dantas de Souza, D. A. A. Morais and R. J. S. Dalmolin, "EURYALE: A versatile Nextflow pipeline for taxonomic classification and functional annotation of metagenomics data," 2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Natal, Brazil, 2024, pp. 1-7, <a href="https://doi.org/10.1109/CIBCB58642.2024.10702116">https://doi.org/10.1109/CIBCB58642.2024.10702116</a></li>
     <li>Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316-319. <a href="https://doi.org/10.1038/nbt.3820">https://doi.org/10.1038/nbt.3820</a></li>
     <li>Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S. (2020). The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology, 38(3), 276-278. <a href="https://doi.org/10.1038/s41587-020-0439-x">https://doi.org/10.1038/s41587-020-0439-x</a></li>
   </ul>