From ae51217c2e0456a0a0e079207163f7e794c3c2dc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jo=C3=A3o=20Cavalcante?= Date: Thu, 2 May 2024 15:56:05 -0300 Subject: [PATCH] chore: Add new outputs included in new microview version (#37) * chore: Update microview module with new outputs Signed-off-by: jvfe * chore: Bump to 1.0.2 Signed-off-by: jvfe --------- Signed-off-by: jvfe --- modules/local/microview.nf | 6 ++++-- nextflow.config | 2 +- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/modules/local/microview.nf b/modules/local/microview.nf index b9aa8ce..1b3f574 100644 --- a/modules/local/microview.nf +++ b/modules/local/microview.nf @@ -4,14 +4,15 @@ process MICROVIEW { conda "bioconda::microview=0.10.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://docker.io/jvfe/microview:v0.10.1': - 'docker.io/jvfe/microview:v0.10.1' }" + 'docker://docker.io/jvfe/microview:v0.11.0': + 'docker.io/jvfe/microview:v0.11.0' }" input: path reports output: path "microview_report.html", emit: report + path "microview_tables" , emit: tables path "versions.yml" , emit: versions when: @@ -35,6 +36,7 @@ process MICROVIEW { """ touch microview_report.html + mkdir microview_tables cat <<-END_VERSIONS > versions.yml "${task.process}": diff --git a/nextflow.config b/nextflow.config index 4873528..eb9dcf7 100644 --- a/nextflow.config +++ b/nextflow.config @@ -201,7 +201,7 @@ manifest { description = """A pipeline for taxonomic classification and functional annotation of metagenomics reads. Based on MEDUSA.""" mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.0.1' + version = '1.0.2' doi = '' }