Added
- Configuration errors are reported in the console and/or in Jupyter (#613)
- The GitHub actions run on both push events and pull requests, and duplicates jobs are skipped (#605)
- Jupytext has a
tox.ini
file, thanks to Chris Sewell (#605)
Fixed
- Freeze optional dependency on
sphinx-gallery
to version~=0.7.0
(#614) - Jupytext's contents manager can be used with
jupyterfs
(#618)
Added
- New option
hide_notebook_metadata
to encapsulate the notebook metadata in an HTML comment (#527) - New option
root_level_metadata_as_raw_cell
. Set it toFalse
if you don't want to see root level metadata of R Markdown notebooks as a raw cell in Jupyter (#415) - New option
doxygen_equation_markers
to translate Markdown equations into Doxygen equations (#517) - New option
custom_cell_magics
to comment out cells starting with user-specific cell magics (#513) - Documented how to use
isort
on notebooks (#553) jupytext notebook.ipynb --to filename.py
will warn that--to
is used in place of--output
.jupytext --set-formats filename.py
will suggest to use--sync
instead of--set-formats
(#544)- Warn if 'Include Metadata' is off when saving text files in Jupyter (#561)
- Test that notebooks paired through a configuration file are left unmodified (#598)
- Test that metadata filters in the configuration files are taken into account when using
jupytext --to
(#543) - New argument
--run-path
to execute the notebooks at the desired location (#595) - Activated GitHub code scanning alerts
Changed
- Jupytext now depends on
markdown-it-py
(Python 3.6 and above) and always features the MyST-Markdown format, thanks to Chris Sewell (#591) - The
md:myst
andmd:pandoc
are always included in the Jupytext formats, and an informative runtime error will occur if the required dependencies, resp.markdown-it-py
andpandoc
, are not installed. (#556) - The
# %%
cell marker has the same indentation as the first line in the cell (#562) - Jupytext is now installed from source on MyBinder to avoid cache issues (#567)
- The tests that execute a notebook are now skipped on Windows to avoid timeout issues (#489)
Fixed
- Only scripts can have an encoding comment, not Markdown or R Markdown files (#576)
- Spaces in
--pipe
commands are supported (#562) - Bash commands starting with special characters are now correctly detected, thanks to Aaron Gokaslan (#587)
- MyST Markdown files are recognized as such even if MyST-Markdown is not available (#556)
- Build JupyterLab with
dev-build=False
andminimize=False
on mybinder to avoid build errors - Configured coverage targets in
codecov.yml
Changed
- The documentation uses the Alabaster theme
Fixed
- Preserve indentation when commenting out magic commands (#437)
- Fixed MyBinder -
jupytext.py
is not a configuration file (#559, #567)
Fixed
- Added
toml
as a dependency (#552). - Filtered out
__pycache__
and.pyc
files from the pip package. - Fixed coverage upload by adding
coverage
as a dependency to the conda CI workflow. - Fixed the conda CI / Python 2.7 job by explicitly installing
backports.functools_lru_cache
(#554).
Added
- Jupytext can use a local or global configuration file (#508)
- Jupytext can pair notebooks in trees. Use e.g.
notebooks///ipynb,scripts///py:percent
if you want to replicate the tree of notebooks undernotebooks
in a folder namedscripts
(#424) - The extension for Jupyter Notebook has a New Text Notebook menu that creates text-only notebooks (#443)
- Groovy and Java are now supported, thanks to Przemek Wesołek (#500)
- The Coconut language is also supported, thanks to Thurston Sexton (#532)
- Resource files with
.resource
extension from the Robot Framework are supported, thanks to Hiski Valli (#535) - Jupytext is tested in
pip
andconda
environments, on Linux, Mac OS and Windows, using Github actions (#487) - Jupytext uses pre-commit checks and automatic reformatting with
pre-commit
,black
andflake8
(#483) - Documentation improvements:
- Mention that the YAML header can be created with either
--set-kernel
,--set-formats
, or both (#485) - Mention that one should use double quotes, not single quotes, around
jupytext --check
commands like"pytest {}"
on Windows (#475) - Improved error message when a file is in a version that can't be read by Jupytext (#531)
- Mention that the YAML header can be created with either
Fixed
- Skip the
jupytext --execute
tests when the warning Timeout waiting for IOPub output occurs, which is the case intermittently on Windows (#489) - Fixed wrong paired paths when syncing with the --pre-commit flag (#506)
Added
- Added an example with custom notebook metadata (#469)
- Added an example with custom cell tags (#478)
Changed
- The outputs from the
.ipynb
file are matched with the input cells from the text file with less strict rules. In this version, a search and replace on the text file will not remove the outputs any more (#464). - Update parsing of myst notebooks to new (markdown-it based) parser (please upgrade to
myst-parser
to version~0.8
) (#473) - Use
os.path.samefile
when searching for the kernel that corresponds to the current environment (--set-kernel -
)
Fixed
- Fixed the CLI example for not commenting out magic commands:
--opt comment_magics=false
. In addition, most of thejupytext
commands inusing-cli.md
are now tested! (#465) jupytext.read
andjupytext.write
now give more meaningful errors when the format information is incorrect (#462)- Multiline comments starting or ending with quadruple quotes should not cause issues anymore (#460)
- Fixed active cells in the py:percent format (#477)
Added
- Script of script (SoS) notebooks are now supported. Thanks to Thomas Pernet-coudrier for contributing the sample notebook (#453).
- New MyST Markdown format (
md:myst
), developed by the ExecutableBookProject team. Read more about the MyST Markdown format in the documentation. And many thanks to Chris Sewell for contributing the actual implementation! (#447 #456 #458)
Fixed
- When using
jupytext --pipe cmd
, the output ofcmd
should not appear in the terminal (#432)
Changed
- The new jupyterlab extension (in version 1.2.0) is compatible with JupyterLab 2.0. Many thanks to Jean Helie! (#449)
- It is not compatible with JupyterLab 1.x anymore. If you wish, you can install manually the previous version of the extension with
jupyter labextension install [email protected]
.
Fixed
- Display the output/errors of command executed with
jupytext --pipe
orjupytext --check
(#432)
Fixed
- Removed leading slash in notebook paths (#444)
- Fixed
jupytext --set-formats
when using formats with prefix and/or suffix (#450)
Added
- C# and F# Jupyter notebooks are now supported (#427, #429)
Fixed
jupytext --to script *.ipynb
now computes the script extension for each notebook (#428)- Fix shebang handling for languages with non-# comments, by Jonas Bushart (#434)
- Indented bash commands are now commented out (#437)
- The main formats are documented in
jupytext --help
(#426, #433)
Added
- Jupytext has a logo! Many thanks to Kyle Kelley for contributing the actual logo (#423), and to Chris Holdgraf for suggesting this (#260).
- Nested metadata filtering is now supported! You can use this to rid of
jupytext_version
if you wish (#416).
Fixed
- Code cells in the Markdown format can contain triple backticks inside multiline strings (#419).
- Changes in the YAML header when running
jupytext --test
on text files are ignored (#414).
Fixed
- The
--pre-commit
mode now ignores non-notebook files in the index (#338). nbformat_minor
is taken from the notebook with outputs When inputs and outputs are merged.
Added
- New
nomarker
format in the Jupyter Notebook and JupyterLab extensions (#397)
Changed
- The
normarker
format replaces the one previously namedbare
.
Fixed
- Multiline strings are now accepted in the YAML header (#404). Fix contributed by ZHUO Qiang (#405).
- Fixed the instructions on how to use multiline comments for all Markdown cells in the py:percent format, by ZHUO Qiang (#403).
- Added
cd
to the list of magic commands. - Do not read paired files when
--set-formats
is being used (fixes #399).
See also What's new in Jupytext 1.3?
Added
- Pairing a notebook to both
.md
and.py
is now supported. Input cells are loaded from the most recent text representation (#290) - Both the Jupyter Notebook and the Jupyter Lab extension for Jupytext were updated (#290)
- Raw cells are now encoded using HTML comments (
<!-- #raw -->
and<!-- #endraw -->
) in Markdown files (#321) - Markdown cells can be delimited with any of
<!-- #region -->
,<!-- #markdown -->
or<!-- #md -->
(#344) - Code blocks from Markdown files, when they don't have an explicit language, appear in Markdown cells in Jupyter (#321)
- Code blocks with an explicit language and a
.noeval
attribute are inactive in Jupyter (#347) - Markdown and raw cells can be quoted with triple quotes in the
py:percent
format. And Markdown cells can start with just# %% [md]
(#305) - The light format uses
# + [markdown]
rather than the previouscell_type
metadata to identify markdown cells with metadata (#356) - Explicit Markdown cells in the light format
# + [markdown]
can use triple quotes (#356) - IPython magic help commands like
float?
are classified as magics, and thus commented in Python scripts (#297) - Cell metadata can be encoded as either
key=value
(the new default) or in JSON. An automatic optioncell_metadata_json
should help minimize the impact on existing files (#344) - R Markdown hidden inputs, outputs, or cells are now mapped to the corresponding Jupyter Book tags by default (#337)
- The notebook metadata filter is automatically updated when extra keys are added to the YAML header (#376)
- The Jupyter Notebook extension for Jupytext is compatible with Jupyter Notebook 6.0 (#346)
jupytext notebook.py --to ipynb
updates the timestamp ofnotebook.py
so that the paired notebook still works in Jupyter (#335, #254)jupytext --check pytest notebook.ipynb
can be used to run test functions in a notebook (#286)jupytext --check
andjupytext --pipe
can run commands that only operate on files: when{}
is found in the text of the command,jupytext
saves the text representation of the notebook in a temp file, and replaces{}
with the name of that file before executing the command. (#286)- Documented how to sync notebooks in a pre-commit hook (#338)
- Added support for Rust/Evxcr, by Jonas Bushart (#351)
- Added support for Robot Framework, by Asko Soukka (#378)
- Added support for PowerShell (#349)
Changed
- Use
CHANGELOG.md
rather thanHISTORY.rst
Fixed
- Commands like
cat = x
are not magic commands, so they are not commented any more (#339) - Fixed an inconsistent round trip (code cell with
"cat"
being converted to a markdown cell) in thepy:light
format (#339) jupytext --test textfile.ext
now really compares the text file to its round trip (rather than the corresponding notebook) (#339)- Markdown cells that contain code are now preserved in a round trip through the Markdown and R Markdown formats (#361)
- Code cells with a
%%python3
cell magic are now preserved in a round trip through the Markdown format (#365) jupytext --execute
runs the notebook in its folder (#382)- Strings in the metadata of code cells are quoted in the Rmd representation. And we escape R code in chunk options with
#R_CODE#
(#383)
Added
- The documentation includes a mention on how to set metadata filters at the command line (#330)
- Jupytext will not catch any error when the flag
--warn-only
is not set (#327)
Fixed
- Now the flag
--warn-only
catches every possible error (#263) .md
and.markdown
files are treated identically (#325)- Fixed
--set-kernel
when using pipes (#326) - Fixed utf-8 encoding on stdout on Python 2 (#331)
Fixed
- Dependency on
setuptools
inpandoc.py
made optional to fix the build of the conda package (#310, #323)
Added
- Documentation includes a section on how to use Jupytext as a Python library (#317)
- Mention of the server extension in the documentation (#304)
- Text notebooks can be tested with
jupytext --execute notebook.md
(#303) - The default value of
as_version
injupytext.read
isnbformat.NO_CONVERT
, as fornbformat.read
- Jupytext tests are now included in sdist (#310)
Fixed
- Fixed the usability of the
fmt
argument injupytext.read
(#312) - Fixed the download notebook error when
c.notebook_extensions
has a custom value (#318) - String delimiters in commented text are now ignored (#307)
Added
- Added documentation on how to use Jupytext with JupyterLab 0.35 (#299)
- and on using Jupytext with the pre-commit package manager (#292)
- The
read
andwrite
functions are easier to use (#292)
Fixed
- Jupytext now ships the
jupyterlab-jupytext
extension in version 1.0.2. The version 1.0.1 erroneously introduces atarget_formats
metadata in the jupytext section, instead offormats
, and works only after two clicks.
Added
- New
--execute
option in Jupytext CLI (#231) - The
--set-formats
option in Jupytext CLI also triggers--sync
, allowing shorter commands. jupytext
'sread
andwrite
functions can be used as drop-in replacements fornbformat
's ones (#262).jupytext --sync
will now skip unpaired notebooks (#281).- The JupyterLab extension was updated. It now works on on text files (#213) and has a new option to include (or not) the metadata in the text representation of the notebook.
- Jupytext's contents manager class is derived dynamically from the default CM class for compatibility with
jupyter_server
(#270) - Removed dependency on
mock
andtestfixtures
, thanks to Jean-Sebastien Dieu (#279) - Added support for
.markdown
extension (#288)
Fixed
- The
jupyterlab-jupytext
extension shipped with the python package is in version 1.0.1, and is compatible only with JupyterLab >= 1.0. If you use an earlier version of JupyterLab, please install the version 0.19 of the extension withjupyter labextension install [email protected]
(#276, #278) - Text files can be unpaired (#289)
Added
- Added support for Scala notebook, by Tobias Frischholz (#253)
- Added a getting started notebook for jupytext (and Binder), by Chris Holdgraf (#257)
- The Markdown and R Markdown representations are now tested for all the languages
- The Jupytext notebook extension also works when the notebook is a text file (#213)
Fixed
- The Jupytext Menu in Jupyter Notebook is now compatible with
jupyter_nbextensions_configurator
(#178) - Entries in the Jupytext menu are updated when the menu is hovered on (#248)
- Fixed link to
.md
files in the documentation (#255)
Added
- Jupytext now supports Javascript and Typescript, thanks to Hatem Hosny (#250)
- Jupytext works with Python 3.8 as well
Fixed
- Fix global
auto
pairing (#249)
Fixed
- Fixed implicit dependency on
jupyter_client
(#245)
Added
- New argument
--set-kernel
in Jupytext command line (#230) - Jupytext now accepts
--to script
or--to auto
(#240) - Jupytext now has a real Sphinx documentation on readthedocs, thanks to Chris Holdgraf (#237)
Fixed
- Invalid notebooks may cause a warning, but not a fatal error (#234)
- Jupyter server extension leaves the contents manager unchanged if it is a sub-class of Jupytext's CM (#236)
- Fixed format inference when metadata is present but not format information (#239)
- Preserve executable and encoding information in scripts with metadata (#241)
Added
- Support for IDL notebooks and .pro scripts (#232)
Added
- Jupytext's content manager has a new
notebook_extensions
option (#224, #183) - Cells can be made inactive in scripts with the
active-ipynb
cell tag (#226)
Fixed
- Directories ending in .jl (or .ipynb) are not notebooks (#228)
- Empty notebooks have no language (#227)
Added
- Jupytext server extension leaves the contents manager unchanged when it is already a subclass of TextFileContentsManager (#218)
- The base class for TextFileContentsManager defaults to FileContentsManager when LargeFileManager is not available (#217)
Added
- Markdown and R Markdown formats now support metadata (#66, #111, #188)
- The
light
format for Scripts can use custom cell markers, e.g. Vim or VScode/PyCharm folding markers (#199) - Pandoc's Markdown format for Jupyter notebooks is available in Jupytext as
md:pandoc
(#208)
Fixed
- Jupytext's contents manager is now based on
LargeFileManager
to allow large file uploads (#210) - YAML header parsed with yaml.safe_load rather than yaml.load (#215)
- IPython line magic can be split across lines (#209)
jupytext --to py
rather than--to python
in the README (#216)
Fixed
- Fix the error 'notebook file has changed on disk' when saving large notebooks (#207)
Added
- Wildcard are now supported on Windows (#202)
- Trusted notebooks remain trusted when inputs cells are modified (#203)
Fixed
- Pre-commit mode adds the result of conversion to the commit (#200)
Added
- Matlab and Octave notebooks and scripts are now supported (#197)
Fixed
notebook_metadata_filter = "all"
now works (#196)- Default pairing in subfolders fixed in Jupyter Lab (#180)
Added
- Rename notebooks in pairs in the tree view (#190)
- Associate
.scm
file extension with Scheme scripts (#192) - Added support for Clojure, by bzinberg (#193)
Fixed
- Allow spaces between
?
or!
and python or bash command (#189)
Fixed
- Exclude tests in package deployment (#184)
- Jupytext's serverextension only runs selected init steps (#185)
- Added an additional test for magic arguments (#111)
Added
- Jupytext now includes a Jupyter Notebook extension and a JupyterLab extension (#86).
- Jupytext command line has more arguments:
--paired-paths
to list the paths for the paired representations of the notebook, and--sync
to synchronise the content of all paired paths based on the most recent file (#146). In addition, the--from
argument is optional even when the notebook is read from stdin (#148). - The pairing information, and more generally the notebook metadata can be edited with the CLL, see the
--set-formats
and the--update-metadata
arguments (#141). - Jupytext can
--pipe
the text representation of a notebook to external programs likeblack
orflake8
(#154, #142) - The Python representation of notebooks containing PEP8 cells is now expected to be PEP8 compliant (#154).
- Format specification allow prefix and suffix for path and file name (#138, #142). Use
ipynb,prefix/suffix.py:percent
to pair the current notebook namednotebook.ipynb
to a script namedprefixnotebooksuffix.py
. Suffix and prefix can also be configured on theipynb
file, with the same syntax. - Introducing a new
hydrogen
format for scripts, which derives frompercent
. In that format Jupyter magic commands are not commented (#59, #126, #132). - Introducing a new
bare
format for scripts, which derives fromlight
. That format has no cell marker. Use a notebook metadata filter{"jupytext": {"notebook_metadata_filter":"-all"}}
if you want no YAML header (#152). - The default format for R script is now
light
, as for the other languages. - Added support for q/kdb+ notebooks (#161).
- Python scripts or Markdown documents that have no Jupyter metadata receive a metadata filter that ensures that metadata is not exported back to the text representation (#124).
- Metadata filters are represented as strings rather than dictionaries to make YAML headers shorter. Previous syntax from #105 is still supported. They were also renamed to
notebook_metadata_filter
andcell_metadata_filter
. - Markdown and RMarkdown formats have a new option
split_at_heading
to split Markdown cells at heading (#130)
Fixed
- Main language of scripts is inferred from script extension. Fixes a round trip conversion issue for Python notebooks with a Javascript cell.
- Non-Python scripts opened as notebooks in Jupyter are now correctly saved even when no matching kernel is found.
- Jupyter magic commands like
ls
are commented in the light and R markdown format (#149). - Cell starting with
%%html
,%%latex
are now commented out in thelight
,percent
andRmd
formats (#179).
Added
- The
language_info
section is not part of the default header any more. Language information is now taken from metadatakernelspec.language
. (#105). - When opening a paired notebook, the active file is now the file that was originally opened (#118). When saving a notebook, timestamps of all the alternative representations are tested to ensure that Jupyter's autosave does not override manual modifications.
- Jupyter magic commands are now commented per default in the
percent
format (#126, #132). Version for thepercent
format increases from '1.1' to '1.2'. Set an optioncomment_magics
tofalse
either per notebook, or globally on Jupytext's contents manager, or onjupytext
's command line, if you prefer not to comment Jupyter magics. - Jupytext command line has a pre-commit mode (#121).
Added
bash
scripts as notebooks (#127)- R scripts with
.r
extension are supported (#122) - Jupytext selects the first kernel that matches the language (#120)
Added
- Notebook metadata is filtered - only the most common metadata are stored in the text representation (#105)
- New config option
freeze_metadata
on the content manager and on the command line interface (defaults toFalse
). Use this option to avoid creating a YAML header or cell metadata if there was none initially. (#110) - Language magic arguments are preserved in R Markdown, and also supported in
light
andpercent
scripts (#111, #114, #115) - First markdown cell exported as a docstring when using the Sphinx format (#107)
Added
- Frozen cells are supported in R Markdown, light and percent scripts (#101)
- Inactive cells extended to percent scripts (#108)
jupytext
gains a--version
argument (#103)- "ExecuteTime" cell metadata is not included in the text representation anymore (#106)
Added
- Round trip conversion testing with
jupytext --test
was improved (#99) - Round trip conversion tested on Jake Vanderplas' Python for Data Science Handbook.
Fixed
- Nested lists and dictionaries are now supported in notebook metadata
- Final empty code cell supported in Sphinx representation
Fixed
- Sphinx format tested on
World population
notebook (#97) - Mirror test made stronger on this occasion!
- Markdown representation recognize Julia, Scheme and C++ code cells as such
- Light representation of Scheme and C++ notebooks fixed (#61)
Added
- All
jupytext
related metadata goes to ajupytext
section (#91). Please make sure your collaborators use the same version of Jupytext, as the new version can read previous metadata, but not the opposite. - Notebooks extensions can be prefixed with any prefix of at most three chars (#87).
- Export of the same notebook to multiple formats is now supported. To export to all python formats, plus
.ipynb
and.md
, use"jupytext": {"formats": "ipynb,pct.py:percent,lgt.py:light,spx.py:sphinx,md"},
. - README includes a short section on how to extend
light
andpercent
formats to more languages (#61). - Jupytext's contents manager accepts the
auto
extension indefault_jupytext_formats
(#93). - All Jupyter magics are escaped in
light
scripts and R markdown documents. Escape magics in other formats with acomment_magics
metadata (true or false), or with the contents managercomment_magics
global flag (#94).
Fixed
- Trusting notebooks made functional again.
- Command line
jupytext
returns a meaningful error when no argument is given. - Fixed global pairing configuration (#95).
Added
light
andpercent
formats made available for scheme and cpp notebooks. Adding more formats is straightforward - just add a new entry to _SCRIPT_EXTENSIONS in languages.py, a sample notebook and a mirror test (#61)- Format name is automatically appended to extension in
jupytext_formats
when notebook is loaded/saved.
Fixed
- Notebooks extensions can only be prefixed with
.nb
(#87)
Fixed
- Markdown cells header in sphinx gallery format may have a space between first # and following.
Added
- Header for cells in
percent
format is more robust: use[markdown]
and[raw]
to identify cell types. Cell type comes after the cell title. (#59) - Jupytext can read and write notebooks as Hydrogen/VScode/Spyder/PyCharm compatible scripts (cells starting with
# %%
) (#59) - Jupytext can read and write notebooks as Sphinx-gallery compatible scripts (#80)
- Metadata are supported for all cell types in light python and percent formats (#66). Due to this, light python format version is now 1.3. Light python notebooks in versions 1.1 and 1.2 are still readable.
- Command line
jupytext
has afrom
argument, and now accepts notebook from the standard input.
Fixed
- Fix merging of input and output notebooks (#83)
- Removed extra new line on stdout in command line
jupytext
(#84)
Added
- Code lines that start with a quotation mark in Jupyter are commented in the corresponding Python and Julia scripts (#73)
- Update pypy, add flake8 tests on Travis CI (#74)
Fixed
- Import notebook.transutils before notebook.services.contents.filemanager (#75)
Added
- Jupytext will not load paired notebook when text representation is out of date (#63)
- Package tested against Python 3.7 (#68)
Fixed
- Allow unicode characters in notebook path (#70)
- Read README.md as unicode in
setup.py
(#71)
Added
- Lighter cell markers for Python and Julia scripts (#57). Corresponding file format version at 1.2. Scripts in previous version 1.1 can still be opened.
- New screenshots for the README.
Fixed
- Command line conversion tool
jupytext
fixed on Python 2.7 (#46)
Added
- Initial support for Jupyter notebooks as Julia scripts (#56)
- Command line conversion tool
jupytext
has explicitto
andoutput
options (#46) - Round trip test with
jupytext --test
improved (#54) - Improved README (#51)
Fixed
- testfixtures now in requirements (#55)
- Empty code cells are now preserved (#53)
Added
- Package and conversion script renamed from
nbrmd
tojupytext
.
Added
- Cell parsing and exporting done in two specialized classes. This is way easier to read. Pylint score at 9.9 !
- Python file format updated to 1.1: default end of cell for python scripts is one blank space. Two blank spaces are allowed as well. Now you can reformat code in Python IDE without breaking notebook cells (#38).
- Added support for plain markdown files (#40, #44).
- Demonstration notebooks more user friendly (#45).
- Command line tool simpler to use (#46).
- Start code patterns present in Jupyter cells are escaped.
- Default
nbrmd_format
is empty (mwouts/nbsrc/#5): no Jupyter notebook is created on disk when the user opens a Python or R file and saves it from Jupyter, unless the users asks for it by settingnbrmd_format
.
Fixed
- Fixed message in the
nbsrc
script (#43) - Technical metadata don't appear any more in scripts unless required (#42)
- Code cells that are fully commented remain code cells after round trip (#41)
Added
- R to Rmd conversion compares well to knitr::spin (#26)
- Increased coverage to 98%
Fixed
- Read and write version to the same metadata (#36)
Added
- Classical jupyter extensions (autoreload, rmagics) are also escaped (#35)
- Explicit file format version, set at 1.0, to avoid overriding ipynb files by accident (#36)
Fixed
- Source only notebooks can be trusted.
Added
- Jupyter magic commands escaped when exported (#29)
- 'endofcell' option for explicit (optional) end-of-cell marker (#31)
- 'active' cell option now supported for .py and .R export (#30)
- Raw cells now preserved when exported to .py or .R (#32)
- Extensions can be prefixed, like
.nb.py
, (mwouts/nbsrc#5) - When a file with an extension not associated to 'ipynb' is opened and saved, no 'ipynb' file is created (mwouts/nbsrc#5)
- Extensions can now be a sequence of groups. For instance,
nbrmd_formats="ipynb,nb.py;script.ipynb,py"
will create anipynb
file when anb.py
is opened (and conversely), and ascript.ipynb
file when apy
file is opened (mwouts/nbsrc#5) nbsrc
script was moved to thenbrmd
package. Thenbsrc
package now only contains the documentation (mwouts/nbsrc#3)
- Ping pypi - previous version still not available
Fixed
- Removed dependency of
setup.py
onyaml
Fixed
- Package republished with
python setup.py sdist bdist_wheel
to fix missing dependencies
Added
- Multiline comments now supported #25
- Readme refactored, notebook demos available on binder #23
Fixed
- ContentsManager can be imported even if
notebook.transutils
is not available, for compatibility with older python distributions. - Fixed missing cell metadata #27
- Documentation tells how to avoid creating
.ipynb
files #16
Added
- Added test for R notebooks
- Added pylint badge, imports now in correct order
- New
active
cell metadata that allows cell activation only for desired extensions (currently available for Rmd and ipynb extensions only)
Fixed
- Indented python code will not start a new cell #20
- Fixed parsing of Rmd cell metadata #21
Added
.py
format for notebooks is lighter and pep8 compliant
Fixed
- Default nbrmd config not added to notebooks (#17)
nbrmd_formats
becomes a configurable traits (#16)- Removed
nbrmd_sourceonly_format
metadata. Source notebook is current notebook when not.ipynb
, otherwise the first notebook format innbrmd_formats
(not.ipynb
) that is found on disk
Added
- Introducing support for notebooks as python
.py
or R scripts.R
Added
- Introduced
nbrmd_sourceonly_format
metadata - Inputs are loaded from
.Rmd
file when a matching.ipynb
file is opened.
Fixed
- Trusted notebooks remain trusted (#12)
Added
- Outputs of existing
.ipynb
versions are combined with matching inputs of R markdown version, as suggested by @grst (#12)
Fixed
- Support for unicode text in python 2.7 (#11)
Added
- nbrmd will always open notebooks, even if header of code cells are not terminated. Merge conflicts can thus be solved in Jupyter directly.
- New metadata 'main language' that preserves the notebook language.
Fixed
- dependencies included in
setup.py
- pre_save_hook work with non-empty
notebook_dir
(#9)
Added
- Screenshots in README
Fixed
- RMarkdown exporter for nbconvert fixed on non-recent python
- Tests compatible with other revisions of nbformat >= 4.0
- Tests compatible with older pytest versions
Added
- RMarkdown exporter for nbconvert
- Parsing of R options robust to parenthesis
- Jupyter cell tags are preserved
Fixed
- requirements.txt now included in pypi packages
Added
- Support for editing markdown files in Jupyter
- New pre-save hook
update_selected_formats
that saves to formats in metadata 'nbrmd_formats' - Rmd cell options directly mapped to cell metadata
Fixed
- ContentManager compatible with Python 2.7
Added
- The package provides a
RmdFileContentsManager
for direct edit of R markdown files in Jupyter - Notebook metadata and cell options are preserved
Added
nbrmd
prints the result of conversion to stdout, unless flag-i
is provided- Notebooks with R code chunks are supported
- Initial version with the
nbrmd
converter and Jupyterpre_save_hook