diff --git a/src/Swashbuckle.AspNetCore.SwaggerGen/SwaggerGenerator/SwaggerGenerator.cs b/src/Swashbuckle.AspNetCore.SwaggerGen/SwaggerGenerator/SwaggerGenerator.cs
index d54369f191..d20fbf83a5 100644
--- a/src/Swashbuckle.AspNetCore.SwaggerGen/SwaggerGenerator/SwaggerGenerator.cs
+++ b/src/Swashbuckle.AspNetCore.SwaggerGen/SwaggerGenerator/SwaggerGenerator.cs
@@ -41,19 +41,41 @@ public SwaggerGenerator(
 
         public async Task<OpenApiDocument> GetSwaggerAsync(string documentName, string host = null, string basePath = null)
         {
-            var (applicableApiDescriptions, swaggerDoc, schemaRepository) = GetSwaggerDocument(documentName, host, basePath);
+            var (applicableApiDescriptions, swaggerDoc, schemaRepository) = GetSwaggerDocumentWithoutFilters(documentName, host, basePath);
+
             swaggerDoc.Components.SecuritySchemes = await GetSecuritySchemes();
+
+            // NOTE: Filter processing moved here so they may effect generated security schemes
+            var filterContext = new DocumentFilterContext(applicableApiDescriptions, _schemaGenerator, schemaRepository);
+            foreach (var filter in _options.DocumentFilters)
+            {
+                filter.Apply(swaggerDoc, filterContext);
+            }
+
+            swaggerDoc.Components.Schemas = new SortedDictionary<string, OpenApiSchema>(swaggerDoc.Components.Schemas, _options.SchemaComparer);
+
             return swaggerDoc;
         }
 
         public OpenApiDocument GetSwagger(string documentName, string host = null, string basePath = null)
         {
-            var (applicableApiDescriptions, swaggerDoc, schemaRepository) = GetSwaggerDocument(documentName, host, basePath);
+            var (applicableApiDescriptions, swaggerDoc, schemaRepository) = GetSwaggerDocumentWithoutFilters(documentName, host, basePath);
+
             swaggerDoc.Components.SecuritySchemes = GetSecuritySchemes().Result;
+
+            // NOTE: Filter processing moved here so they may effect generated security schemes
+            var filterContext = new DocumentFilterContext(applicableApiDescriptions, _schemaGenerator, schemaRepository);
+            foreach (var filter in _options.DocumentFilters)
+            {
+                filter.Apply(swaggerDoc, filterContext);
+            }
+
+            swaggerDoc.Components.Schemas = new SortedDictionary<string, OpenApiSchema>(swaggerDoc.Components.Schemas, _options.SchemaComparer);
+
             return swaggerDoc;
         }
 
-        private (IEnumerable<ApiDescription>, OpenApiDocument, SchemaRepository) GetSwaggerDocument(string documentName, string host = null, string basePath = null)
+        private (IEnumerable<ApiDescription>, OpenApiDocument, SchemaRepository) GetSwaggerDocumentWithoutFilters(string documentName, string host = null, string basePath = null)
         {
             if (!_options.SwaggerDocs.TryGetValue(documentName, out OpenApiInfo info))
                 throw new UnknownSwaggerDocument(documentName, _options.SwaggerDocs.Select(d => d.Key));
@@ -77,14 +99,6 @@ public OpenApiDocument GetSwagger(string documentName, string host = null, strin
                 SecurityRequirements = new List<OpenApiSecurityRequirement>(_options.SecurityRequirements)
             };
 
-            var filterContext = new DocumentFilterContext(applicableApiDescriptions, _schemaGenerator, schemaRepository);
-            foreach (var filter in _options.DocumentFilters)
-            {
-                filter.Apply(swaggerDoc, filterContext);
-            }
-
-            swaggerDoc.Components.Schemas = new SortedDictionary<string, OpenApiSchema>(swaggerDoc.Components.Schemas, _options.SchemaComparer);
-
             return (applicableApiDescriptions, swaggerDoc, schemaRepository);
         }