The AraGWAS backend is a django app that serves as a REST endpoint for the AraGWAS frontend.
pip install -r requirements.txt
Before the AraGWAS backend can be used, the RabbitMQ server must be started and the genotypes need to be indexed in the elasticserach database
To make it easy to get started, the docker-compose.yml file will start both services.
docker-compose up -d elasticsearch1 amqp1
To get the genotype information indexed in the ES database, run the init_elasticsearch.sh script. This has to be done only once.
./init_elasticserach.sh
This will download the data and start the indexing proceess, which can take a while (~ 15 minutes). Afterwards you can start the backend with the command below.
./manage runserver