Merge branch 'refinegems-integration' of https://github.com/draeger-l…

…ab/SPECIMEN into refinegems-integration

docs/build/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 0fb85034dd4ee52eca935a0038112cc8
+config: e6df1f6e9c96870d3ba9c601c63df629
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/build/html/_modules/index.html

@@ -18,7 +18,7 @@
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
         <script src="../_static/documentation_options.js?v=8d563738"></script>
-        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
         <script src="../_static/copybutton.js?v=7859de39"></script>
@@ -81,19 +81,7 @@
            <div itemprop="articleBody">
 
   <h1>All modules for which code is available</h1>
-<ul><li><a href="specimen/classes/reports.html">specimen.classes.reports</a></li>
-<li><a href="specimen/cmpb/workflow.html">specimen.cmpb.workflow</a></li>
-<li><a href="specimen/hqtb/core/analysis.html">specimen.hqtb.core.analysis</a></li>
-<li><a href="specimen/hqtb/core/bidirectional_blast.html">specimen.hqtb.core.bidirectional_blast</a></li>
-<li><a href="specimen/hqtb/core/generate_draft_model.html">specimen.hqtb.core.generate_draft_model</a></li>
-<li><a href="specimen/hqtb/core/refinement/annotation.html">specimen.hqtb.core.refinement.annotation</a></li>
-<li><a href="specimen/hqtb/core/refinement/cleanup.html">specimen.hqtb.core.refinement.cleanup</a></li>
-<li><a href="specimen/hqtb/core/refinement/extension.html">specimen.hqtb.core.refinement.extension</a></li>
-<li><a href="specimen/hqtb/core/refinement/smoothing.html">specimen.hqtb.core.refinement.smoothing</a></li>
-<li><a href="specimen/hqtb/core/validation.html">specimen.hqtb.core.validation</a></li>
-<li><a href="specimen/hqtb/workflow.html">specimen.hqtb.workflow</a></li>
-<li><a href="specimen/util/set_up.html">specimen.util.set_up</a></li>
-<li><a href="specimen/util/util.html">specimen.util.util</a></li>
+<ul><li><a href="specimen/util/util.html">specimen.util.util</a></li>
 </ul>
 
            </div>