Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft Model: better annotation with is / isHomologTo #12

Open
cb-Hades opened this issue Jul 11, 2024 · 0 comments
Open

Draft Model: better annotation with is / isHomologTo #12

cb-Hades opened this issue Jul 11, 2024 · 0 comments
Labels
enhancement New feature or request question Further information is requested

Comments

@cb-Hades
Copy link
Collaborator

During the renaming of the genes in the draft model creation, it might be better to sort the available annotations to what truly can be considered an is relationship (default currently) and what would better be describes as isHomologTo using the bqbiol formulation of SBML.

  • keep the old gene name or already covered using the NCBI protein reference? Does this work for all models or just the one tested?

Possible problem: current implementation of the function solely based on COBRApy

@cb-Hades cb-Hades added enhancement New feature or request question Further information is requested labels Jul 11, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request question Further information is requested
Projects
None yet
Development

No branches or pull requests

1 participant