NAMESPACE

# Generated by roxygen2: do not edit by hand

export(ChangeTrajRoot)
export(MergeClusters)
export(PrepareTotem)
export(ReturnClustering)
export(ReturnDynwrapObject)
export(ReturnMSTNetwork)
export(ReturnSlingshotObject)
export(ReturnSmoothedTrajNetwork)
export(ReturnTrajNames)
export(RunClustering)
export(RunDimRed)
export(RunSmoothing)
export(RunTotem)
export(SelectClusterings)
export(VizCellConnectivity)
export(VizClustering)
export(VizFeatureExpression)
export(VizMST)
export(VizSmoothedTraj)
import(dplyr)
import(dynwrap)
import(purrr)
import(slingshot)
import(tibble)
importFrom(Matrix,Matrix)
importFrom(Matrix,rowSums)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"counts<-")
importFrom(SingleCellExperiment,"logcounts<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(ape,mst)
importFrom(aricode,ARI)
importFrom(cluster,clara)
importFrom(cowplot,plot_grid)
importFrom(dyndimred,dimred_landmark_mds)
importFrom(dyndimred,dimred_mds)
importFrom(dyndimred,dimred_pca)
importFrom(dyndimred,dimred_tsne)
importFrom(dyndimred,dimred_umap)
importFrom(dynplot,plot_dimred)
importFrom(dynwrap,add_trajectory)
importFrom(dynwrap,wrap_data)
importFrom(fpc,calinhara)
importFrom(ggplot2,element_text)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,theme)
importFrom(methods,is)
importFrom(plyr,mapvalues)
importFrom(princurve,project_to_curve)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(utils,head)