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get_ancestors and get_descendants have the same arguments. #572

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merged 10 commits into from
May 12, 2023

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They now have the same arguments:
classes, generations and common.

Tests for get_ancestors have been added.

Description:

Type of change:

  • Bug fix.
  • New feature.
  • Documentation update.

Checklist:

This checklist can be used as a help for the reviewer.

  • Is the code easy to read and understand?
  • Are comments for humans to read, not computers to disregard?
  • Does a new feature has an accompanying new test (in the CI or unit testing schemes)?
  • Has the documentation been updated as necessary?
  • Does this close the issue?
  • Is the change limited to the issue?
  • Are errors handled for all outcomes?
  • Does the new feature provide new restrictions on dependencies, and if so is this documented?

Comments:

They now have the same arguments:
classes, generations and common.wq
@francescalb francescalb linked an issue Mar 16, 2023 that may be closed by this pull request
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codecov bot commented Mar 16, 2023

Codecov Report

Merging #572 (02922b6) into master (6c70491) will increase coverage by 0.46%.
The diff coverage is 100.00%.

@@            Coverage Diff             @@
##           master     #572      +/-   ##
==========================================
+ Coverage   67.44%   67.91%   +0.46%     
==========================================
  Files          16       16              
  Lines        3130     3135       +5     
==========================================
+ Hits         2111     2129      +18     
+ Misses       1019     1006      -13     
Impacted Files Coverage Δ
ontopy/graph.py 68.02% <100.00%> (+0.34%) ⬆️
ontopy/ontology.py 73.62% <100.00%> (+1.88%) ⬆️

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Approved. I will leave it to you to decide whether to add a separate test for line 408

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Added some comments

@jesper-friis jesper-friis self-requested a review April 24, 2023 17:56
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Added some comments

@francescalb francescalb merged commit b85be7b into master May 12, 2023
@francescalb francescalb deleted the 406-harmonize-get_descendants-and-get_ancestors branch May 12, 2023 07:52
TEAM4-0 pushed a commit that referenced this pull request Apr 12, 2024
Updates the requirements on
[pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the
latest version.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's
changelog</a>.</em></p>
<blockquote>
<h2>5.0.0 (2024-03-24)</h2>
<ul>
<li>Removed support for xdist rsync (now deprecated).
Contributed by Matthias Reichenbach in
<code>[#623](pytest-dev/pytest-cov#623)
&lt;https://github.com/pytest-dev/pytest-cov/pull/623&gt;</code>_.</li>
<li>Switched docs theme to Furo.</li>
<li>Various legacy Python cleanup and CI improvements.
Contributed by Christian Clauss and Hugo van Kemenade in
<code>[#630](pytest-dev/pytest-cov#630)
&lt;https://github.com/pytest-dev/pytest-cov/pull/630&gt;</code><em>,
<code>[#631](pytest-dev/pytest-cov#631)
&lt;https://github.com/pytest-dev/pytest-cov/pull/631&gt;</code></em>,
<code>[#632](pytest-dev/pytest-cov#632)
&lt;https://github.com/pytest-dev/pytest-cov/pull/632&gt;</code>_ and
<code>[#633](pytest-dev/pytest-cov#633)
&lt;https://github.com/pytest-dev/pytest-cov/pull/633&gt;</code>_.</li>
<li>Added a <code>pyproject.toml</code> example in the docs.
Contributed by Dawn James in
<code>[#626](pytest-dev/pytest-cov#626)
&lt;https://github.com/pytest-dev/pytest-cov/pull/626&gt;</code>_.</li>
<li>Modernized project's pre-commit hooks to use ruff. Initial POC
contributed by
Christian Clauss in
<code>[#584](pytest-dev/pytest-cov#584)
&lt;https://github.com/pytest-dev/pytest-cov/pull/584&gt;</code>_.</li>
</ul>
<h2>4.1.0 (2023-05-24)</h2>
<ul>
<li>Updated CI with new Pythons and dependencies.</li>
<li>Removed rsyncdir support. This makes pytest-cov compatible with
xdist 3.0.
Contributed by Sorin Sbarnea in
<code>[#558](pytest-dev/pytest-cov#558)
&lt;https://github.com/pytest-dev/pytest-cov/pull/558&gt;</code>_.</li>
<li>Optimized summary generation to not be performed if no reporting is
active (for example,
when <code>--cov-report=''</code> is used without
<code>--cov-fail-under</code>).
Contributed by Jonathan Stewmon in
<code>[#589](pytest-dev/pytest-cov#589)
&lt;https://github.com/pytest-dev/pytest-cov/pull/589&gt;</code>_.</li>
<li>Added support for JSON reporting.
Contributed by Matthew Gamble in
<code>[#582](pytest-dev/pytest-cov#582)
&lt;https://github.com/pytest-dev/pytest-cov/pull/582&gt;</code>_.</li>
<li>Refactored code to use f-strings.
Contributed by Mark Mayo in
<code>[#572](pytest-dev/pytest-cov#572)
&lt;https://github.com/pytest-dev/pytest-cov/pull/572&gt;</code>_.</li>
<li>Fixed a skip in the test suite for some old xdist.
Contributed by a bunch of people in
<code>[#565](pytest-dev/pytest-cov#565)
&lt;https://github.com/pytest-dev/pytest-cov/pull/565&gt;</code>_.</li>
</ul>
<h2>4.0.0 (2022-09-28)</h2>
<p><strong>Note that this release drops support for
multiprocessing.</strong></p>
<ul>
<li>
<p><code>--cov-fail-under</code> no longer causes <code>pytest
--collect-only</code> to fail
Contributed by Zac Hatfield-Dodds in
<code>[#511](pytest-dev/pytest-cov#511)
&lt;https://github.com/pytest-dev/pytest-cov/pull/511&gt;</code>_.</p>
</li>
<li>
<p>Dropped support for multiprocessing (mostly because <code>issue 82408
&lt;https://github.com/python/cpython/issues/82408&gt;</code>_). This
feature was
mostly working but very broken in certain scenarios and made the test
suite very flaky and slow.</p>
<p>There is builtin multiprocessing support in coverage and you can
migrate to that. All you need is this in your
<code>.coveragerc</code>::</p>
<p>[run]
concurrency = multiprocessing</p>
</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/5295ce01c84262cec88f31255e9ac538718f3047"><code>5295ce0</code></a>
Bump version: 4.1.0 → 5.0.0</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/1181b067972bf94569f8011f3b18f271690f9ab1"><code>1181b06</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9757222e2e044361e70125ebdd96e5eb87395983"><code>9757222</code></a>
Fix a minor grammar error (<a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/636">#636</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9f5cd81a0dbe3fe41681efdbef516c08988fe8ff"><code>9f5cd81</code></a>
Cleanup releasing instructions. Closes <a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/616">#616</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/93b5047ec5050d63c10a6fe16a09b671a7a03df8"><code>93b5047</code></a>
Add test for pyproject.toml loading without explicit --cov-config. Ref
<a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/508">#508</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/ff50860d7c67b920503745d92a3f0944cf41f982"><code>ff50860</code></a>
docs: add config instructions for pyproject.toml.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/4a5a4b5fa4b1c63ddcab5cbc1813798c9b6f1d36"><code>4a5a4b5</code></a>
Keep GitHub Actions up to date with GitHub's Dependabot</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/1d7f55963d5138f41c452a946f7cca7e0b6ee8b2"><code>1d7f559</code></a>
Fix or remove URLs that are causing docs tests to fail</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/6a5af8e85b8242ac815f33e26adf9068f5f0ebc3"><code>6a5af8e</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/d9fe8dfed15023d3410dd299c5092e755b8981c2"><code>d9fe8df</code></a>
Switch to furo. Closes <a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/618">#618</a>.</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0">compare
view</a></li>
</ul>
</details>
<br />


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Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Francesca L. Bleken <[email protected]>
Co-authored-by: francescalb <[email protected]>
TEAM4-0 pushed a commit that referenced this pull request Nov 4, 2024
Updates the requirements on
[pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the
latest version.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's
changelog</a>.</em></p>
<blockquote>
<h2>6.0.0 (2024-10-29)</h2>
<ul>
<li>Updated various documentation inaccuracies, especially on subprocess
handling.</li>
<li>Changed fail under checks to use the precision set in the coverage
configuration.
Now it will perform the check just like <code>coverage report</code>
would.</li>
<li>Added a <code>--cov-precision</code> cli option that can override
the value set in your coverage configuration.</li>
<li>Dropped support for now EOL Python 3.8.</li>
</ul>
<h2>5.0.0 (2024-03-24)</h2>
<ul>
<li>Removed support for xdist rsync (now deprecated).
Contributed by Matthias Reichenbach in
<code>[#623](pytest-dev/pytest-cov#623)
&lt;https://github.com/pytest-dev/pytest-cov/pull/623&gt;</code>_.</li>
<li>Switched docs theme to Furo.</li>
<li>Various legacy Python cleanup and CI improvements.
Contributed by Christian Clauss and Hugo van Kemenade in
<code>[#630](pytest-dev/pytest-cov#630)
&lt;https://github.com/pytest-dev/pytest-cov/pull/630&gt;</code><em>,
<code>[#631](pytest-dev/pytest-cov#631)
&lt;https://github.com/pytest-dev/pytest-cov/pull/631&gt;</code></em>,
<code>[#632](pytest-dev/pytest-cov#632)
&lt;https://github.com/pytest-dev/pytest-cov/pull/632&gt;</code>_ and
<code>[#633](pytest-dev/pytest-cov#633)
&lt;https://github.com/pytest-dev/pytest-cov/pull/633&gt;</code>_.</li>
<li>Added a <code>pyproject.toml</code> example in the docs.
Contributed by Dawn James in
<code>[#626](pytest-dev/pytest-cov#626)
&lt;https://github.com/pytest-dev/pytest-cov/pull/626&gt;</code>_.</li>
<li>Modernized project's pre-commit hooks to use ruff. Initial POC
contributed by
Christian Clauss in
<code>[#584](pytest-dev/pytest-cov#584)
&lt;https://github.com/pytest-dev/pytest-cov/pull/584&gt;</code>_.</li>
</ul>
<h2>4.1.0 (2023-05-24)</h2>
<ul>
<li>Updated CI with new Pythons and dependencies.</li>
<li>Removed rsyncdir support. This makes pytest-cov compatible with
xdist 3.0.
Contributed by Sorin Sbarnea in
<code>[#558](pytest-dev/pytest-cov#558)
&lt;https://github.com/pytest-dev/pytest-cov/pull/558&gt;</code>_.</li>
<li>Optimized summary generation to not be performed if no reporting is
active (for example,
when <code>--cov-report=''</code> is used without
<code>--cov-fail-under</code>).
Contributed by Jonathan Stewmon in
<code>[#589](pytest-dev/pytest-cov#589)
&lt;https://github.com/pytest-dev/pytest-cov/pull/589&gt;</code>_.</li>
<li>Added support for JSON reporting.
Contributed by Matthew Gamble in
<code>[#582](pytest-dev/pytest-cov#582)
&lt;https://github.com/pytest-dev/pytest-cov/pull/582&gt;</code>_.</li>
<li>Refactored code to use f-strings.
Contributed by Mark Mayo in
<code>[#572](pytest-dev/pytest-cov#572)
&lt;https://github.com/pytest-dev/pytest-cov/pull/572&gt;</code>_.</li>
<li>Fixed a skip in the test suite for some old xdist.
Contributed by a bunch of people in
<code>[#565](pytest-dev/pytest-cov#565)
&lt;https://github.com/pytest-dev/pytest-cov/pull/565&gt;</code>_.</li>
</ul>
<h2>4.0.0 (2022-09-28)</h2>
<p><strong>Note that this release drops support for
multiprocessing.</strong></p>
<ul>
<li><code>--cov-fail-under</code> no longer causes <code>pytest
--collect-only</code> to fail</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/95404375a0e436178e012e20b8865c23c54c8a50"><code>9540437</code></a>
Bump version: 5.0.0 → 6.0.0</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9f8175467afc67db9001fb364ad1f2dfe79b51f1"><code>9f81754</code></a>
Further trim down envs and drop Python 3.8.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/b12b5ec65da4c66bbc0c35918957f9f875f465c3"><code>b12b5ec</code></a>
Update conf.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/23f4b27b432a54fcc3b6df7363f0e73e568233fb"><code>23f4b27</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/291a04f49566054bb19644aba27c3799ac8b7f42"><code>291a04f</code></a>
Bump test deps and trim config.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/08f1101455ba293dda388fdb3b61e62fd95a827d"><code>08f1101</code></a>
Add <code>--cov-precision</code> option. Close <a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/655">#655</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/76fe2a7e48e5c9c53644994c5ba5a421c84286f5"><code>76fe2a7</code></a>
Move the warnings/errors in a place that doesn't import anything.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/a9ea7b71711479d4c5ccc5e21e2eb1694b259cb0"><code>a9ea7b7</code></a>
Implement error/warning for the bad dynamic_context being set in
config.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/c299e01b6422284a6a7f7322e6b9bf8f44aa3c25"><code>c299e01</code></a>
Add explicit suffixing to make it easier to see the identify the
sources/usag...</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/c87e54643ef696ed2b0e2b9a4209581da8467fcb"><code>c87e546</code></a>
Add reproducer for weird xdist dynamic_context interaction. Ref <a
href="https://redirect.github.com/pytest-dev/pytest-cov/issues/604">#604</a>.</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest-cov/compare/v5.0.0...v6.0.0">compare
view</a></li>
</ul>
</details>
<br />


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Harmonize get_descendants and get_ancestors
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