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Output SAM format #44

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ezorita opened this issue May 18, 2018 · 0 comments

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ezorita commented May 18, 2018 •

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Description

Make output compatible with SAM standard format.

Subtasks

Gather enough information at the print step to generate all SAM fields.

Acceptance criteria

Output follows all SAM format specifications.

Test procedures

Generate input sequences to test all possible combinations of SAM flags.

Dependencies

Depends on Full stack error propagation #37

ezorita added status:design-in-progress status: ready and removed status:design-in-progress labels

ezorita added this to the Sprint 1 milestone

ezorita modified the milestones: Sprint 1, Sprint 2

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