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Performance benchmarks #46

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9 tasks

ezorita opened this issue May 18, 2018 · 0 comments

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ezorita commented May 18, 2018 •

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Description

As a developer I want automated benchmarks to compare the performance with BWA, bowtie and any other mapper.

Subtasks

TBD

Acceptance criteria

Comparison of performance in different reference genomes.
Comparison of performance with simulated and real data.
Benchmark the following performance indicators:
- True positives per minute (sim).
- Peak memory usage (sim/real).
- Venn diagram of true positives (sim).
- Venn diagram of sequences found (real).
- Running time (real).
- ROC curves (sim).

Test procedures

None.

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