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Make mapping intervals during alignment #7

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ezorita opened this issue Oct 19, 2015 · 0 comments
Open

Make mapping intervals during alignment #7

ezorita opened this issue Oct 19, 2015 · 0 comments
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ezorita commented Oct 19, 2015 •
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The first alignment defines the interval (use align_bp). Align the overlapping seeds using align (without breakpoint) for the full span of the interval, if the score is good at the end of the alignment, continue extending using align_bp.

This may save some time at the alignment stage.
@ezorita ezorita self-assigned this Oct 19, 2015
@ezorita ezorita changed the title Make mapping intervals at alignment stage Make mapping intervals during alignment May 17, 2018
@ezorita ezorita mentioned this issue May 17, 2018
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