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NEWS.md

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SWMPR 2.5.1

  • Update stat_locs object for active stations in the NERR system.

SWMPR 2.5.0

  • Added keep_qaqcstatus argument to import_local() to retain historical and provisionalplus columns in the output

  • Added unit testing for most functions

SWMPr 2.4.3

  • Removed maptools dependency, replaced with getSunlightTimes() function from suncalc package to estimate metabolic days in metab_day() function

SWMPr 2.4.2

  • Added fill argument to plot_summary as option to fill missing values with long term monthly averages or linear interpolation

  • Added base_size argument for global text size in plot_summary

  • Fix to annual anomalies in plot_summary as average of monthly sums

  • Enhancement to qaqc to work if angle brackets not included in qualifier codes

  • Only required functions from data.table dependency imported

SWMPr 2.4.1

  • Fix to map_reserve function for updates to ggmap

  • Added Pacific/Honolulu time zone and 'hee' site code to time_vec function for He'eia reserve

  • Added colsleft, colsmid, and colsright arguments to plot_summary for separate colors on left, mid, right portions of plot

  • URL fix to metab_day documentation

SWMPr 2.4.0

  • Each function is now in its own file instead of grouped by categories (thanks Kim!)

  • Fix to gas exchange estimate for correct units in ecometab function

  • Fixing broken URLs in vignette and package documentation

SWMPr 2.3.1

  • Added collMethd argument to import_local function to specify diel or standard monthly sampling for nutrient samples

  • Minor fix to swmpr function if trailing white spaces found at end of each qaqc column

  • Minor fix to help files if searching by concept, e.g., help.search('analyze', package = "SWMPr")

SWMPr 2.3.0

  • Added informative error message if IP address not registered for using CDMO web services

  • Added plot_quants function to evaluate trends relative to long-term averages

  • All numeric columns are forced to numeric atomic vectors on input

  • Documentation updated to indicate a return value in the calckl function

  • Fixed bug with comb function if differ argument is incorrect

  • Added option in qaqc to included additional columns specifying censored values (via cens_id function)

SWMPr 2.2.0

  • Added plot_wind function for wind roses from weather data

  • Fixes to decomp_cj function, including grandmean back to output

  • Added point and line options for overplot

  • Trailing whitespace in qaqc columns are removed in swmpr argument

  • Removed dependency to deprecated wq package

  • Safety stop in import_local if data type not in station code

  • Removed use of setstep function in ecometab that caused less precise results

  • Fixed bug with sanity check of depth_val argument in ecometab

  • Fixed bug with metab_day if original time series was not continuous

  • Default S3 method added to ecometab

SWMPr 2.1.5

  • parser now uses xmlTreeParse making CDMO retrieval functions much faster

SWMPr 2.1.4

  • Fixed case issue with import_local

SWMPr 2.1.3

  • Fixed bug with qaqc function that treated integer flags the same regardless of sign

SWMPr 2.1.2

  • Default method for smoother was added,

  • aggremetab can now use moving window smoothing with appropriate changes in plot_metab

SWMPr 2.1.1

  • Fixed bug with character input for timestep argument in setstep. The default value for differ was causing an error.

SWMPr 2.1.0

  • Version update for push to CRAN, previous was 2.0.0. See the notes below about each version change for updates since the last push.

SWMPr 2.0.14

  • Fixed issue with default method of comb that caused error if the input was not a list of objects to combine.

SWMPr 2.0.13

  • Default method for comb added so it can be used with non-swmpr objects.

SWMPr 2.0.12

  • Default method for setstep added so it can be used with non-swmpr objects.

SWMPr 2.0.11

  • Default method for decomp added so it can be used with non-swmpr objects.

SWMPR 2.0.10

  • Default method for decomp_cj added so it can be used with non-swmpr objects.

SWMPr 2.0.9

  • overplot function added that allows plotting of multiple variables on the sample plot with different y-axes.

SWMPr 2.0.8

  • qaqc function now uses string matching to keep flags. This is a more flexible approach to keeping desired flags, the previous version used hard coded integers for each flag.

SWMPr 2.0.7

  • Fixed bug in plot_summary that returned an error if a cumulative precipitation column was present. This is no longer collected by SWMP but older datasets may have have it included.

SWMPr 2.0.6

  • Some tweaks to import_local to handle more flexible text input for the station code. Function doesn't break if the file extension is included and the date is stripped from the station attribute of the imported swmpr object.

SWMPr 2.0.5

  • import_local function can now import files directly from a zipped folder, i.e., it doesn't have to be decompressed first.

  • SWMPr functions can be searched by concepts - retrieve, organize, analyse, e.g., help.search('retrieve', package = 'SWMPr')

SWMPr 2.0.4

  • single_param now retreives more than 100 records by using all_params_dtrng internally.

SWMPr 2.0.3

  • all_params now retreives more than 100 records by using all_params_dtrng internally.

SWMPr 2.0.2

  • all_params_dtrng function now retrieves more than 1000 records from the CDMO. In theory, all records for a station can be retrieved but this would take a long time.

SWMPr 2.0.1

  • A character string input can be used to specify the value for the timestep argument in the setstep function, e.g., "hours". See the help file.